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理解手性笼状体系隐藻素-PP-111的拉曼光学活性特征的周围效应

Understanding the surrounding effects on Raman optical activity signatures of a chiral cage system: Cryptophane-PP-111.

作者信息

D'haese Lou C G, Daugey Nicolas, Pitrat Delphine, Brotin Thierry, Kapitán Josef, Liégeois Vincent

机构信息

Theoretical Chemistry Laboratory (LCT), Namur Institute of Structured Matter (NISM), University of Namur, 5000 Namur, Belgium.

Groupe Spectroscopie Moléculaire (GSM), Institut des Sciences Moléculaires (ISM), UMR-5255 CNRS, University of Bordeaux, 33405 Talence, France.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2024 Feb 5;306:123484. doi: 10.1016/j.saa.2023.123484. Epub 2023 Oct 5.

Abstract

Cryptophane molecules are cage-like structures consisting in two hemispheres, each made of three benzene rings. These hemispheres are bound together with three O(CH)Olinkers of various lengths giving rise to a plethora of cryptophane derivatives. Moreover, they are able to encapsulate neutral guests: CHCl, CHCl, …; and charged species: Cs, Tl, …. Finally, they exhibit chiroptical properties thanks to the anti arrangement of the linkers between the hemispheres. This work focuses on the Raman optical activity (ROA) signatures of Cryptophane-111 (n=1 for each linker). More specifically, we aim at simulating accurately its ROA spectra with and without a xenon atom inside its cavity. Experimental data (Buffeteau et al., 2017) have already demonstrated the effect of the encapsulation in the low-wavenumbers region. To generate the initial structures, we rely on the novel Conformer-Rotamer Ensemble Sampling Tool (CREST) program, developed by S. Grimme and co-workers. This is required due to the flexibility provided by the linkers. The CREST algorithm seems promising and has already been used to sample the potential energy surface (PES) of target systems before the simulation of their vibrational spectroscopies (Eikås et al., 2022). We observe large similarities between the two sets of conformers (one with and one without Xe encapsulated), demonstrating the robustness of the CREST algorithm. For corresponding structures, the presence of xenon pushed the two hemispheres slightly further apart. After optimization at the DFT level, only one unique conformer has a Boltzmann population ratio greater than 1%, pointing out the relative rigidity of the cage. Based on this unique conformer, our simulations are in good agreement with the experimental data. Regarding xenon encapsulation, the (experimental and theoretical) ROA signatures at low wavenumbers are impacted: slight shifts in wavenumbers are observed as well as a decrease in relative ROA intensity for bands around 150 cm. The wavenumber shifts were very well reproduced by our simulations, but the experimental decrease in the ROA intensity was unfortunately not reproduced.

摘要

隐藻素分子是笼状结构,由两个半球组成,每个半球由三个苯环构成。这些半球通过三个不同长度的O(CH)O连接体连接在一起,从而产生了大量的隐藻素衍生物。此外,它们能够包封中性客体:CHCl、CHCl等;以及带电物种:Cs、Tl等。最后,由于半球之间连接体的反式排列,它们表现出手性光学性质。这项工作聚焦于隐藻素-111(每个连接体n = 1)的拉曼光学活性(ROA)特征。更具体地说,我们旨在精确模拟其在有空腔和无空腔时的ROA光谱。实验数据(Buffeteau等人,2017年)已经证明了包封在低波数区域的影响。为了生成初始结构,我们依赖于由S. Grimme及其同事开发的新型构象异构体 - 旋转异构体系综采样工具(CREST)程序。由于连接体提供的灵活性,这是必需的。CREST算法似乎很有前景,并且已经在模拟目标系统的振动光谱之前用于对其势能面(PES)进行采样(Eikås等人,2022年)。我们观察到两组构象异构体(一组包封了Xe,一组未包封)之间有很大的相似性,这证明了CREST算法的稳健性。对于相应的结构,氙的存在使两个半球稍微分开得更远。在DFT水平上进行优化后,只有一个独特的构象异构体的玻尔兹曼布居比大于1%,这表明笼子具有相对的刚性。基于这个独特的构象异构体,我们的模拟与实验数据吻合良好。关于氙的包封,低波数下的(实验和理论)ROA特征受到影响:观察到波数有轻微偏移,并且在150 cm左右的波段相对ROA强度有所降低。我们的模拟很好地再现了波数偏移,但遗憾的是没有再现ROA强度的实验性降低。

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