Suppr超能文献

基于拉曼光谱的新型损耗函数和改进 GA-CNN 模型预测溶液中氧氟沙星浓度。

Raman spectroscopy-based prediction of ofloxacin concentration in solution using a novel loss function and an improved GA-CNN model.

机构信息

School of Information and Control Engineering, Liaoning Petrochemical University, Fushun, 113001, China.

School of Artificial Intelligence and Software, Liaoning Petrochemical University, Fushun, 113001, China.

出版信息

BMC Bioinformatics. 2023 Oct 30;24(1):409. doi: 10.1186/s12859-023-05542-3.

Abstract

BACKGROUND

A Raman spectroscopy method can quickly and accurately measure the concentration of ofloxacin in solution. This method has the advantages of accuracy and rapidity over traditional detection methods. However, the manual analysis methods for the collected Raman spectral data often ignore the nonlinear characteristics of the data and cannot accurately predict the concentration of the target sample.

METHODS

To address this drawback, this paper proposes a novel kernel-Huber loss function that combines the Huber loss function with the Gaussian kernel function. This function is used with an improved genetic algorithm-convolutional neural network (GA-CNN) to model and predict the Raman spectral data of different concentrations of ofloxacin in solution. In addition, the paper introduces recurrent neural networks (RNN), long short-term memory (LSTM), bidirectional long short-term memory (BiLSTM) and gated recurrent units (GRU) models to conduct multiple experiments and use root mean square error (RMSE) and residual predictive deviation (RPD) as evaluation metrics.

RESULTS

The proposed method achieved an [Formula: see text] of 0.9989 on the test set data and improved by 3% over the traditional CNN. Multiple experiments were also conducted using RNN, LSTM, BiLSTM, and GRU models and evaluated their performance using RMSE, RPD, and other metrics. The results showed that the proposed method consistently outperformed these models.

CONCLUSIONS

This paper demonstrates the effectiveness of the proposed method for predicting the concentration of ofloxacin in solution based on Raman spectral data, in addition to discussing the advantages and limitations of the proposed method, and the study proposes a solution to the problem of deep learning methods for Raman spectral concentration prediction.

摘要

背景

拉曼光谱法能够快速准确地测量溶液中氧氟沙星的浓度。与传统检测方法相比,该方法具有准确性和快速性的优点。然而,对采集到的拉曼光谱数据进行人工分析的方法往往忽略了数据的非线性特征,无法准确预测目标样品的浓度。

方法

针对这一缺陷,本文提出了一种新的核 Huber 损失函数,该函数将 Huber 损失函数与高斯核函数相结合。利用该函数与改进的遗传算法-卷积神经网络(GA-CNN)相结合,对溶液中不同浓度氧氟沙星的拉曼光谱数据进行建模和预测。此外,本文还引入了循环神经网络(RNN)、长短时记忆(LSTM)、双向长短时记忆(BiLSTM)和门控循环单元(GRU)模型,进行了多项实验,并使用均方根误差(RMSE)和剩余预测偏差(RPD)作为评估指标。

结果

该方法在测试集数据上的[Formula: see text]达到 0.9989,比传统的 CNN 提高了 3%。还使用 RNN、LSTM、BiLSTM 和 GRU 模型进行了多项实验,并使用 RMSE、RPD 等指标评估了它们的性能。结果表明,该方法始终优于这些模型。

结论

本文证明了基于拉曼光谱数据预测溶液中氧氟沙星浓度的方法的有效性,此外还讨论了该方法的优点和局限性,并提出了一种用于拉曼光谱浓度预测的深度学习方法的解决方案。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cf7/10617066/e7e9230922a4/12859_2023_5542_Fig1_HTML.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验