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机器学习鉴定与二硫键错配相关阿尔茨海默病分子亚型的免疫浸润。

Machine learning identification and immune infiltration of disulfidptosis-related Alzheimer's disease molecular subtypes.

机构信息

Department of Traditional Chinese Medicine, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.

出版信息

Immun Inflamm Dis. 2023 Oct;11(10):e1037. doi: 10.1002/iid3.1037.

Abstract

BACKGROUND

Alzheimer's disease (AD) is a common neurodegenerative disorder. Disulfidptosis is a newly discovered form of programmed cell death that holds promise as a therapeutic strategy for various disorders. However, the functional roles of disulfidptosis-related genes (DRGs) in AD remain unknown.

METHODS

Microarray data and clinical information from patients with AD and healthy controls were downloaded from the Gene Expression Omnibus database. A thorough examination of DRG expression and immune characteristics in both groups was performed. Based on the identified DRGs, we performed an unsupervised clustering analysis to categorize the AD samples into various disulfidptosis-related molecular clusters. Weighted gene co-expression network analysis was performed to select hub genes specific to disulfidptosis-related AD clusters. The performances of various machine learning models were compared to determine the optimal predictive model. The predictive ability of the optimal model was assessed using nomogram analysis and five external datasets.

RESULTS

Eight DRGs showed differential expression between the AD and control samples. Two different molecular clusters were identified. The immune cell infiltration analysis revealed distinct differences in the immune microenvironment of the two clusters. The support vector machine model showed the highest performance, and a panel of five signature genes was identified, which showed excellent performance on the external validation datasets. The nomogram analysis also showed high accuracy in predicting AD.

CONCLUSION

We identified disulfidptosis-related molecular clusters in AD and established a novel risk model to assess the likelihood of developing AD. These findings revealed a complex association between disulfidptosis and AD, which may aid in identifying potential therapeutic targets for this debilitating disorder.

摘要

背景

阿尔茨海默病(AD)是一种常见的神经退行性疾病。二硫键凋亡是一种新发现的程序性细胞死亡形式,有望成为各种疾病的治疗策略。然而,二硫键凋亡相关基因(DRGs)在 AD 中的功能作用尚不清楚。

方法

从基因表达综合数据库中下载 AD 患者和健康对照的微阵列数据和临床信息。对两组的 DRG 表达和免疫特征进行全面检查。基于鉴定的 DRGs,我们进行了无监督聚类分析,将 AD 样本分为不同的二硫键凋亡相关分子簇。进行加权基因共表达网络分析,以选择特定于二硫键凋亡相关 AD 簇的枢纽基因。比较了各种机器学习模型的性能,以确定最佳预测模型。使用列线图分析和五个外部数据集评估最佳模型的预测能力。

结果

8 个 DRG 在 AD 和对照样本之间表现出差异表达。鉴定出两个不同的分子簇。免疫细胞浸润分析显示两个簇的免疫微环境存在明显差异。支持向量机模型表现出最高的性能,确定了五个特征基因组成的面板,在外部验证数据集上表现出优异的性能。列线图分析也显示出 AD 预测的高准确性。

结论

我们在 AD 中鉴定了二硫键凋亡相关的分子簇,并建立了一种新的风险模型来评估 AD 的发病可能性。这些发现揭示了二硫键凋亡与 AD 之间的复杂关联,这可能有助于确定这种衰弱性疾病的潜在治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fc8/10566450/87388758f53b/IID3-11-e1037-g004.jpg

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