Chuang Ying-Chih, Haas Nicholas W, Pepin Robert, Behringer Megan, Oda Yasuhiro, LaSarre Breah, Harwood Caroline S, McKinlay James B
Department of Biology, Indiana University, Bloomington, IN.
Biochemistry Program, Indiana University, Bloomington, IN.
bioRxiv. 2023 Oct 17:2023.10.17.562681. doi: 10.1101/2023.10.17.562681.
Diverse ecosystems host microbial relationships that are stabilized by nutrient cross-feeding. Cross-feeding can involve metabolites that should hold value for the producer. Externalization of such communally valuable metabolites is often unexpected and difficult to predict. Previously, we fortuitously discovered purine externalization by by its ability to rescue growth of an purine auxotroph. Here we found that an purine auxotroph can stably coexist with due to purine cross-feeding. We identified the cross-fed purine as adenine. Adenine was externalized by under diverse growth conditions. Computational models suggested that adenine externalization occurs via passive diffusion across the cytoplasmic membrane. RNAseq analysis led us to hypothesize that accumulation and externalization of adenine stems from an adenine salvage bottleneck at the enzyme encoded by . Ectopic expression of eliminated adenine externalization, supporting our hypothesis. A comparison of 49 strains suggested that purine externalization is relatively common, with 15 of the strains exhibiting the trait. Purine externalization was correlated with the genomic orientation of orientation, but orientation alone could not explain adenine externalization in some strains. Our results provide a mechanistic understanding of how a communally valuable metabolite can participate in cross-feeding. Our findings also highlight the challenge in identifying genetic signatures for metabolite externalization.
多样的生态系统中存在着通过营养交叉喂养而稳定的微生物关系。交叉喂养可能涉及对生产者有价值的代谢物。这种对群落有价值的代谢物的外化往往出乎意料且难以预测。此前,我们偶然发现[具体微生物名称]通过其拯救嘌呤营养缺陷型生长的能力实现了嘌呤的外化。在这里,我们发现一种嘌呤营养缺陷型能够由于嘌呤交叉喂养而与[具体微生物名称]稳定共存。我们确定交叉喂养的嘌呤为腺嘌呤。在多种生长条件下,[具体微生物名称]都会外化腺嘌呤。计算模型表明,腺嘌呤的外化是通过跨细胞质膜的被动扩散发生的。RNA测序分析使我们推测,腺嘌呤的积累和外化源于由[具体基因名称]编码的酶处的腺嘌呤补救瓶颈。[具体基因名称]的异位表达消除了腺嘌呤的外化,支持了我们的假设。对49株[具体微生物名称]菌株的比较表明,嘌呤外化相对常见,其中15株表现出该特性。嘌呤外化与[具体基因名称]的基因组方向相关,但仅[具体基因名称]方向无法解释某些菌株中的腺嘌呤外化。我们的结果提供了对一种对群落有价值的代谢物如何参与交叉喂养的机制理解。我们的发现还凸显了识别代谢物外化的遗传特征的挑战。