Department of Colorectal Surgery, China Aerospace Science and Industry Corporation 731 Hospital, Beijing, China.
Medicine (Baltimore). 2023 Nov 3;102(44):e36027. doi: 10.1097/MD.0000000000036027.
Leukemia is an abnormal proliferation of white blood cells in the bone marrow, resulting in a large accumulation of abnormal leukemia cells in the blood and bone marrow. Hemorrhoids are dilated and swollen veins in the rectum or anal area. However, the relationship between CALM3 and leukemia and hemorrhoids remains unclear. The hemorrhoids dataset GSE154650 and leukemia dataset GSE26294 were downloaded from GEO databases generated by GPL20301 and GPL571.The R package limma was used to screen differentially expressed genes (DEDs). Weighted gene co-expression network analysis (WGCNA) was performed. The construction and analysis of protein-protein interaction (PPI) network, functional enrichment analysis, Gene Set Enrichment Analysis (GSEA) and comparative toxicogenomics database (CTD) analysis were performed. TargetScan was used to screen miRNAs regulating central DEGs. It was verified by western blot basic cell assay. A total of 125 DEGs were co-identified. According to the GO analysis, they are mainly enriched in small molecule catabolic processes, skin development, and chemokine receptor binding. The KEGG analysis results show that the target cells are mainly enriched in the interaction of cytokines and cytokine receptors, as well as butyric acid metabolism. The GSEA analysis results indicate enrichment in small molecule catabolic processes, skin development, and chemokine receptor binding. Six core genes (CALM3, ACE2, PPARGC1A, XCR1, CFTR, PRKCA) were identified. We found that the core gene CALM3 is highly expressed in hemorrhoid samples, low in leukemia samples, and has low expression in normal samples, which may play a regulatory role in hemorrhoids and leukemia. Immunoinfiltration results showed a higher proportion of T_cells_CD4_memory_resting and a correlation with T_cells_CD8. WB experiment verified the result. CALM3 expression is low in leukemia, and the lower the expression is, the worse the prognosis is. CALM3 is highly expressed in hemorrhoids, and the higher the expression, the worse the prognosis.
白血病是骨髓中白细胞的异常增生,导致血液和骨髓中异常白血病细胞大量堆积。痔疮是直肠或肛门区域扩张和肿胀的静脉。然而,CALM3 与白血病和痔疮之间的关系尚不清楚。从 GEO 数据库中下载了基于 GPL20301 和 GPL571 的白血病数据集 GSE26294 和痔疮数据集 GSE154650。使用 R 包 limma 筛选差异表达基因(DEDs)。进行加权基因共表达网络分析(WGCNA)。构建和分析蛋白质-蛋白质相互作用(PPI)网络,进行功能富集分析、基因集富集分析(GSEA)和比较毒理学基因组数据库(CTD)分析。使用 TargetScan 筛选调节核心 DEGs 的 miRNAs。通过 Western blot 基本细胞测定进行验证。共鉴定出 125 个共同的 DEGs。根据 GO 分析,它们主要富集在小分子分解代谢过程、皮肤发育和趋化因子受体结合中。KEGG 分析结果表明,靶细胞主要富集在细胞因子和细胞因子受体的相互作用以及丁酸代谢中。GSEA 分析结果表明,小分子分解代谢过程、皮肤发育和趋化因子受体结合中存在富集。确定了六个核心基因(CALM3、ACE2、PPARGC1A、XCR1、CFTR、PRKCA)。我们发现核心基因 CALM3 在痔疮样本中高表达,在白血病样本中低表达,在正常样本中低表达,可能在痔疮和白血病中起调节作用。免疫浸润结果显示 T_cells_CD4_memory_resting 的比例较高,与 T_cells_CD8 相关。WB 实验验证了这一结果。CALM3 在白血病中表达较低,表达越低,预后越差。CALM3 在痔疮中表达较高,表达越高,预后越差。