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一种用于设计抗gp130新型抑制剂的计算机支架跳跃方法:在癌症和新冠疫情中的潜在治疗应用

An in-silico scaffold- hopping approach to design novel inhibitors against gp130: A potential therapeutic application in cancer and Covid-19.

作者信息

Roy Alankar, Paul Ishani, Luharuka Shreya, Ray Sujay

机构信息

Amity Institute of Biotechnology, Amity University, Kolkata, India.

出版信息

Mol Divers. 2024 Oct;28(5):3129-3151. doi: 10.1007/s11030-023-10737-0. Epub 2023 Nov 7.

DOI:10.1007/s11030-023-10737-0
PMID:37934366
Abstract

An upregulation of the gp130-signalling cascade has been reported in multiple cancers, making gp130 an attractive target for the development of anticancer drugs. An inverted-funnel-like approach was utilised along with various structure-based drug designing strategies to discover and optimise novel potential inhibitors of gp130. The study resulted in the discovery of 2 ligands- 435 and 510, both of which exhibit a very high-binding affinity towards the gp130 D1 domain which controls cytokine recognition and interaction thus being involved in complexation. The two resulting complexes remained stable over time with the ligands maintaining a steady interaction with the target. This inference is drawn from their RMSD, R, SASA and RMSF analysis. We also tested the protein folding patterns based on their principal component analysis, energy of surface and landscape. The leads also displayed a more favourable ADMET profile than their parent compounds. The two lead candidates show a better therapeutic profile in comparison to the two existing drugs- bazedoxifene and raloxifene. Both these potential leads can be addressed for their activity in-vitro and can be used as a potential anti-cancer treatment as well as to combat Covid-19 related cytokine storm.

摘要

据报道,gp130信号级联在多种癌症中上调,这使得gp130成为开发抗癌药物的一个有吸引力的靶点。采用了一种倒漏斗状方法以及各种基于结构的药物设计策略,以发现和优化gp130的新型潜在抑制剂。该研究发现了两种配体——435和510,它们对控制细胞因子识别和相互作用从而参与复合的gp130 D1结构域都表现出非常高的结合亲和力。随着时间的推移,形成的两种复合物保持稳定,配体与靶点保持稳定的相互作用。这一推断是基于它们的均方根偏差(RMSD)、R值、溶剂可及表面积(SASA)和均方根波动(RMSF)分析得出的。我们还基于主成分分析、表面能和能量景观测试了蛋白质折叠模式。这些先导化合物与其母体化合物相比,还显示出更有利的药物代谢动力学(ADMET)特性。与两种现有药物——巴多昔芬和雷洛昔芬相比,这两种先导候选物表现出更好的治疗效果。这两种潜在的先导化合物都可以针对其体外活性进行研究,并且可以用作潜在的抗癌治疗药物以及对抗与新冠肺炎相关的细胞因子风暴。

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An in-silico scaffold- hopping approach to design novel inhibitors against gp130: A potential therapeutic application in cancer and Covid-19.一种用于设计抗gp130新型抑制剂的计算机支架跳跃方法:在癌症和新冠疫情中的潜在治疗应用
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本文引用的文献

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Traversing DNA-Protein Interactions Between Mesophilic and Thermophilic Bacteria: Implications from Their Cold Shock Response.穿越嗜温和嗜热细菌之间的 DNA-蛋白质相互作用:来自冷休克反应的启示。
Mol Biotechnol. 2024 Apr;66(4):824-844. doi: 10.1007/s12033-023-00711-4. Epub 2023 Mar 11.
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