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核极端学习与协调蝙蝠算法在预测芘毒性中的应用。

Kernel extreme learning with harmonized bat algorithm for prediction of pyrene toxicity in rats.

机构信息

College of Computer Science and Technology, Changchun Normal University, Changchun, China.

School of Surveying and Geospatial Engineering, College of Engineering, University of Tehran, Tehran, Iran.

出版信息

Basic Clin Pharmacol Toxicol. 2024 Feb;134(2):250-271. doi: 10.1111/bcpt.13959. Epub 2023 Dec 5.

DOI:10.1111/bcpt.13959
PMID:37945549
Abstract

Polycyclic aromatic hydrocarbons (PAHs) are organic pollutants and manufactured substances conferring toxicity to human health. The present study investigated whether pyrene, a type of PAH, harms rats. Our research provides an effective feature selection strategy for the animal dataset from Wenzhou Medical University's Experimental Animal Center to thoroughly examine the impacts of PAH toxicity on rat features. Initially, we devised a high-performance optimization method (SCBA) and added the Sobol sequence, vertical crossover and horizontal crossover mechanisms to the bat algorithm (BA). The SCBA-KELM model, which combines SCBA with the kernel extreme learning machine model (KELM), has excellent accuracy and high stability for selecting features. Benchmark function tests are then used in this research to verify the overall optimization performance of SCBA. In this paper, the feature selection performance of SCBA-KELM is verified using various comparative experiments. According to the results, the features of the genes PXR, CAR, CYP2B1/2 and CYP1A1/2 have the most impact on rats. The SCBA-KELM model's classification performance for the gene dataset was 100%, and the model's precision value for the public dataset was around 96%, as determined by the classification index. In conclusion, the model utilized in this research is anticipated to be a reliable and valuable approach for toxicological classification and assessment.

摘要

多环芳烃(PAHs)是有机污染物和人工合成物质,对人类健康具有毒性。本研究调查了多环芳烃中的一种物质——芘,是否会对大鼠造成危害。我们的研究为温州医科大学实验动物中心的动物数据集提供了一种有效的特征选择策略,以深入研究 PAH 毒性对大鼠特征的影响。首先,我们设计了一种高性能优化方法(SCBA),并在蝙蝠算法(BA)中添加了 Sobol 序列、垂直交叉和水平交叉机制。SCBA-KELM 模型将 SCBA 与核极限学习机模型(KELM)相结合,具有出色的特征选择准确性和高稳定性。本研究进一步使用基准函数测试来验证 SCBA 的整体优化性能。在本文中,通过各种对比实验验证了 SCBA-KELM 的特征选择性能。结果表明,基因 PXR、CAR、CYP2B1/2 和 CYP1A1/2 的特征对大鼠的影响最大。SCBA-KELM 模型对基因数据集的分类性能达到 100%,对公共数据集的模型精度约为 96%,这是通过分类指标确定的。综上所述,本研究中使用的模型有望成为一种可靠且有价值的毒理学分类和评估方法。

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