Dong Bo, He Xijing
Department of Orthopedics, Second Affiliated Hospital of Xi'an Jiao Tong University, Xi'an 710004, Shaanxi, China; Department of Orthopedics, Xi'an Honghui Hospital, Xi'an Jiaotong University, 710054, Shaanxi, China.
Department of Orthopedics, Second Affiliated Hospital of Xi'an Jiao Tong University, Xi'an 710004, Shaanxi, China.
Crit Rev Immunol. 2024;44(1):79-90. doi: 10.1615/CritRevImmunol.2023049892.
Spinal cord injury (SCI) is one of the most devastating central lesions, and mitochondrial function plays an important role in secondary injury after SCI. Polydatin (PD) is a natural glycosylated precursor of resveratrol, showing mitochondrial preservation effects in the central nervous system. This study aimed to identify the hub target genes of PD on mitochondrial membrane potential (MMP) in SCI. A comprehensive analysis was performed on SCI-related genes, MMP-related genes, and PD targets screening from public databases. Differential expression analysis was conducted to identify differentially expressed genes (DEGs) in SCI. Gene set enrichment analysis (GSEA) and gene set variation analysis (GSVA) were employed to assess pathway enrichment. Protein-protein interaction (PPI) network analysis and molecular docking were conducted to identify key genes and evaluate the binding affinity between PD and hub genes. A total of 16,958 SCI-related genes, 2,786 MMP-related genes, 318 PD-related target genes, and 7229 DEGs were identified. Intersection analysis revealed 46 genes common to all four categories. GSEA and GSVA analysis identified significant enrichment of pathways associated with suppressed and activated SCI biological processes. The PPI network analysis identified seven core hub genes: EGFR, SRC, VEGFA, STAT3, ERBB2, TP53, and RHOA. Molecular docking revealed strong binding affinities between PD and ERBB2, EGFR, and RHOA. The findings based on computational investigation from public databases suggest that PD may have therapeutic potential for SCI by modulating MMP. These results contribute to the understanding of SCI pathogenesis and the development of novel therapeutic strategies.
脊髓损伤(SCI)是最具破坏性的中枢性损伤之一,线粒体功能在SCI后的继发性损伤中起重要作用。白藜芦醇苷(PD)是白藜芦醇的天然糖基化前体,在中枢神经系统中具有线粒体保护作用。本研究旨在确定PD对SCI中线粒体膜电位(MMP)的关键靶基因。对从公共数据库中筛选的SCI相关基因、MMP相关基因和PD靶点进行了综合分析。进行差异表达分析以鉴定SCI中差异表达的基因(DEG)。采用基因集富集分析(GSEA)和基因集变异分析(GSVA)来评估通路富集情况。进行蛋白质-蛋白质相互作用(PPI)网络分析和分子对接以鉴定关键基因并评估PD与枢纽基因之间的结合亲和力。共鉴定出16958个SCI相关基因、2786个MMP相关基因、318个PD相关靶基因和7229个DEG。交集分析揭示了所有四类共有的46个基因。GSEA和GSVA分析确定了与SCI生物过程抑制和激活相关的通路的显著富集。PPI网络分析确定了七个核心枢纽基因:表皮生长因子受体(EGFR)、原癌基因酪氨酸蛋白激酶(SRC)、血管内皮生长因子A(VEGFA)、信号转导和转录激活因子3(STAT3)、表皮生长因子受体2(ERBB2)、肿瘤蛋白p53(TP53)和RhoA小G蛋白(RHOA)。分子对接显示PD与ERBB2、EGFR和RHOA之间具有很强的结合亲和力。基于公共数据库的计算研究结果表明,PD可能通过调节MMP对SCI具有治疗潜力。这些结果有助于理解SCI的发病机制并开发新的治疗策略。