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利用分子建模技术发现新型恶二唑并吡啶衍生物作为强效胃饥饿素O-酰基转移酶抑制剂

Discovery of new oxadiazolo pyridine derivatives as potent ghrelin O-acyltransferase inhibitors using molecular modeling techniques.

作者信息

Sarkar Kaushik, Das Bipasha, Das Rajesh Kumar

机构信息

Department of Chemistry, University of North Bengal, Darjeeling, 734013 West Bengal India.

出版信息

In Silico Pharmacol. 2023 Nov 9;11(1):35. doi: 10.1007/s40203-023-00167-z. eCollection 2023.

Abstract

UNLABELLED

Diabesity is a major global health concern, and ghrelin O-acyltransferase (GOAT) acts as an important target for the development of new inhibitors of this disease. The present work highlights a detailed QSAR study using QSARINS software, which provides an excellent model equation using descriptors. Here, the best model equation developed has two variables, namely MLFER_E and XlogP, with statistical parameters R = 0.8433, LOF = 0.0793, CCC = 0.915, Q = 0.8303, Q = 0.8275, CCC = 0.9081, R = 0.7712, and CCC = 0.8668. A higher correlation of the key structural fragments with activity is validated by the developed QSAR model. Furthermore, molecular docking helped us identify the binding interactions. Thirty four new molecules with better predicted biological activity (pIC50) were designed. The binding energy of four compounds have shown higher binding activity into the membrane protein (PDB Id: 6BUG). Molecular dynamics simulation has established the stability of the protein-ligand complex over 100 ns. DFT and ADME-toxicity analyses also confirmed their drug-like properties. Based on our findings, we report that these new oxadiazolo pyridine derivatives lead to the development of potent candidates for further development.

GRAPHICAL ABSTRACT

METTL3-mediated HOTAIRM1 promotes vasculogenic mimicry in glioma via regulating IGFBP2 expression. METTL3 expression is high in glioma cells and tissues that stabilize and enhance HOTAIRM1 expression. This HOTAIRM1 then interacts with IGFBP2 which in turn promotes glioma cell malignancy and vasculogenic mimicry (VM) formation, thus providing a new direction for glioma therapy.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s40203-023-00167-z.

摘要

未标记

糖尿病肥胖症是全球主要的健康问题,胃饥饿素O-酰基转移酶(GOAT)是开发该疾病新抑制剂的重要靶点。目前的工作重点是使用QSARINS软件进行详细的定量构效关系(QSAR)研究,该软件使用描述符提供了一个出色的模型方程。在此,开发的最佳模型方程有两个变量,即MLFER_E和XlogP,统计参数为R = 0.8433、LOF = 0.0793、CCC = 0.915、Q = 0.8303、Q = 0.8275、CCC = 0.9081、R = 0.7712和CCC = 0.8668。所开发的QSAR模型验证了关键结构片段与活性之间的更高相关性。此外,分子对接帮助我们确定了结合相互作用。设计了34个预测生物活性(pIC50)更好的新分子。四种化合物的结合能显示出对膜蛋白(PDB编号:6BUG)具有更高的结合活性。分子动力学模拟确定了蛋白质-配体复合物在100纳秒以上的稳定性。密度泛函理论(DFT)和药物代谢及毒性(ADME)分析也证实了它们的类药物性质。基于我们的研究结果,我们报告这些新的恶二唑并吡啶衍生物有望开发出更有效的候选药物以供进一步研发。

图形摘要

METTL3介导的HOTAIRM1通过调节IGFBP2表达促进胶质瘤中的血管生成拟态。METTL3在稳定并增强HOTAIRM1表达的胶质瘤细胞和组织中高表达。然后,这种HOTAIRM1与IGFBP2相互作用,进而促进胶质瘤细胞的恶性程度和血管生成拟态(VM)形成,从而为胶质瘤治疗提供了新方向。

补充信息

在线版本包含可在10.1007/s40203-023-00167-z获取的补充材料。

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本文引用的文献

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3
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Mol Divers. 2023 Jun;27(3):1297-1308. doi: 10.1007/s11030-022-10490-w. Epub 2022 Jul 13.
4
Recent progress in the discovery of ghrelin -acyltransferase (GOAT) inhibitors.
RSC Med Chem. 2020 Sep 4;11(10):1136-1144. doi: 10.1039/d0md00210k. eCollection 2020 Oct 1.
5
An overview of ghrelin -acyltransferase inhibitors: a literature and patent review for 2010-2019.
Expert Opin Ther Pat. 2020 Aug;30(8):581-593. doi: 10.1080/13543776.2020.1776263. Epub 2020 Jun 21.
6
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J Recept Signal Transduct Res. 2020 Aug;40(4):313-323. doi: 10.1080/10799893.2020.1742740. Epub 2020 Mar 30.
7
A Derived QSAR Model for Predicting Some Compounds as Potent Antagonist against : A Theoretical Approach.
Adv Prev Med. 2019 May 2;2019:5173786. doi: 10.1155/2019/5173786. eCollection 2019.
8
The Homeostatic Force of Ghrelin.
Cell Metab. 2018 Apr 3;27(4):786-804. doi: 10.1016/j.cmet.2018.02.008. Epub 2018 Mar 22.
9
CHARMM TIP3P Water Model Suppresses Peptide Folding by Solvating the Unfolded State.
J Phys Chem B. 2016 Apr 21;120(15):3692-8. doi: 10.1021/acs.jpcb.6b01316. Epub 2016 Apr 12.
10
Performance of B3LYP Density Functional Methods for a Large Set of Organic Molecules.
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