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乙氧基邻苯二甲酰亚胺吡唑衍生物抗巨细胞病毒和水痘-带状疱疹病毒的合成、抗病毒活性、分子对接及分子动力学研究:开发新型抗病毒治疗方法的潜在影响和策略

'Synthesis, antiviral activity, molecular docking, and molecular dynamics studies of ethoxy phthalimide pyrazole derivatives against Cytomegalovirus and Varicella-Zoster virus: potential consequences and strategies for developing new antiviral treatments'.

作者信息

Verma Abhishek Kumar, Yadav Vipin, Bhojiya Ali Asger, Upadhyay Sudhir K, Singh Nripendra, Pareek Shruti Shree, Ashid Mohammad, Ahmed Sk Faisal, Hossain Md Shahadat

机构信息

Department of Life Sciences, Faculty of Science and Technology, Mewar University, Chittorgarh, Rajasthan, India.

ECH-Incubation Centre, University of Rajasthan, Jaipur, India.

出版信息

J Biomol Struct Dyn. 2024;42(24):13903-13922. doi: 10.1080/07391102.2023.2279278. Epub 2023 Nov 15.

DOI:10.1080/07391102.2023.2279278
PMID:37965748
Abstract

Substituted ethoxy phthalimide pyrazole derivatives () have been produced using a one-pot synthesis technique. Spectral analysis was used to establish the molecular structure of the synthesized compounds, and they were examined and for their ability to bind to and inhibit replication of the AD-169 strain, the Davis strain of CMV, the OKA strain and the 07/1 strain of Varicella-Zoster virus (VZV). Molecular Docking was used to estimate the binding mechanism and energy of compounds to their respective target proteins, thymidine kinase (TK), Varicella-Zoster protease (VZP) of VZV and tegument protein pp71 (TPpp71) of Cytomegalovirus (CMV). The MIC50 and EC50 were utilized to evaluate the antiviral and cytotoxic activities of test compounds in human embryonic lung (HEL) cells against the two reference medicines, Ganciclovir and Acyclovir. The chemicals studied showed a high affinity for binding sites and near binding sites of target proteins by generating H-bonds, carbon-hydrogen bonds, π-anion, π-sulfur, π-sigma, alkyl and π-alkyl interactions. All of the test compounds () had higher binding energy than the standard medications. The ADME/T data suggests that these potential inhibitors are less toxic. Drug-protein complexes are structurally compact and demonstrate minimal conformational change in molecular dynamics (MDs) simulations, indicating stability and stiffness. MM-PBSA and post-simulation analysis can predict lead compound active cavity binding stability. By inhibiting multitargeted proteins, these synthetic compounds may improve antiviral therapy. Our research suggests that these unique synthesized chemicals may be useful and accessible adjuvant antiviral therapy for Varicella Zoster and CMV. HighlightsTwo components synthesis of substituted ethoxy phthalimide pyrazole derivatives ().Tested compounds () have antiviral and cytotoxicity activity against CMV and Varicella-Zoster virus (VZV) in HEL cells.Compounds bind to TK, Varicella-Zoster protease (VZP) of VZV, and modeled TPpp71 of Cytomegalovirus (CMV).In comparison to reference drugs, compounds have strong binding free energy and interactions with VZV and CMV protein complexes.The RMSD, RMSF, Rg, residual correlative motion (RCM), No. of hydrogen bonds, protein secondary structure content, per-residue protein secondary structure and MM/PBSA energy calculated for the selected compound with thymidine kinase (TK), VZP of VZV, and modeled tegument protein pp71 (TPpp71) of CMV through MD simulation studies for 50 ns.In comparison to the two reference drugs, ligands/compounds were found to meet the Lipinski rule of five and to have strong biological activity.Communicated by Ramaswamy H. Sarma.

摘要

已使用一锅合成技术制备了取代乙氧基邻苯二甲酰亚胺吡唑衍生物()。通过光谱分析确定了合成化合物的分子结构,并检测了它们与巨细胞病毒(CMV)的AD - 169株、戴维斯株、水痘 - 带状疱疹病毒(VZV)的OKA株和07/1株结合并抑制其复制的能力。使用分子对接来估计化合物与其各自靶蛋白——VZV的胸苷激酶(TK)、水痘 - 带状疱疹蛋白酶(VZP)以及CMV的包膜蛋白pp71(TPpp71)的结合机制和能量。利用MIC50和EC50评估测试化合物在人胚肺(HEL)细胞中对两种参考药物更昔洛韦和阿昔洛韦的抗病毒和细胞毒性活性。所研究的化合物通过形成氢键、碳 - 氢键、π - 阴离子、π - 硫、π - σ、烷基和π - 烷基相互作用,对靶蛋白的结合位点和近结合位点表现出高亲和力。所有测试化合物()的结合能均高于标准药物。ADME/T数据表明这些潜在抑制剂毒性较小。药物 - 蛋白质复合物结构紧凑,在分子动力学(MD)模拟中显示出最小的构象变化,表明其稳定性和刚性。MM - PBSA和模拟后分析可以预测先导化合物活性腔的结合稳定性。通过抑制多靶点蛋白,这些合成化合物可能改善抗病毒治疗。我们的研究表明,这些独特的合成化学物质可能是用于水痘带状疱疹和CMV的有用且可及的辅助抗病毒疗法。亮点:取代乙氧基邻苯二甲酰亚胺吡唑衍生物()的双组分合成。测试化合物()在HEL细胞中对CMV和水痘 - 带状疱疹病毒(VZV)具有抗病毒和细胞毒性活性。化合物与TK、VZV的水痘 - 带状疱疹蛋白酶(VZP)以及CMV的模拟TPpp71结合。与参考药物相比,化合物具有很强的结合自由能以及与VZV和CMV蛋白质复合物的相互作用。通过对选定化合物与胸苷激酶(TK)、VZV的VZP以及CMV的模拟包膜蛋白pp71(TPpp71)进行50纳秒的MD模拟研究,计算出RMSD、RMSF、Rg、残余相关运动(RCM)、氢键数量、蛋白质二级结构含量、每个残基的蛋白质二级结构以及MM/PBSA能量。与两种参考药物相比,发现配体/化合物符合Lipinski五规则并具有很强的生物活性。由Ramaswamy H. Sarma传达。

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