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鉴定扩张型心肌病免疫浸润的关键基因。

Identification of the Key Genes of Immune Infiltration in Dilated Cardiomyopathy.

机构信息

Department of Cardiology, First Affiliated Hospital, Guangxi Medical University.

出版信息

Int Heart J. 2023 Nov 30;64(6):1054-1064. doi: 10.1536/ihj.23-182. Epub 2023 Nov 14.

Abstract

Dilated cardiomyopathy (DCM) is a common cause of heart failure. In this study, we screened the immune infiltration-related genes associated with DCM to explore the potential molecular mechanisms and provide a basis for the early diagnosis and development of new immunotherapeutic targets. A dataset related to DCM was downloaded from the Gene Expression Omnibus (GEO) database. R software was applied to the genetic differential analysis of patients with DCM and healthy individuals, and the obtained differential expressed genes (DEGs) were screened for differentially expressed immune-related genes (DEIRGs) after comparison with the immune microsatellite database. Gene functional analysis established a protein interaction network (PPI). The immune infiltration in patients with DCM versus normal controls was assessed using the CIBERSORT algorithm, the hub genes were screened using the MOCDE app, and the hubs were validated in multiple datasets. A total of 246 DEGs were screened (adj. P < 0.05 and |logFC| > 0.3), and a total of 170 DEIRGs were compared. Gene Ontology analysis showed significant (adj. P < 0.05) Biological Process entries of 591, Cellular Component of 10, and Molecular Function of 39; Kyoto Encyclopedia of Genes and Genomes showed 20 significant entries, mainly focused on cytokines involved in immune-related response, etc. A protein interaction network comprising 28 hub DEGs was constructed in combination with the PPI network interactions. DEIRG was mainly distributed in the T-cell receptor pathway by immune infiltration detection analysis, and significant changes in central memory T-cells were found by analyzing T-cell-related subpathways, where INSR, HLA-B, IFITM1, and HBEGF were significantly differentially expressed. We selected 632 hospitalized patients for validation and found that INSR and HLA-B expression were associated with DCM development by Nomogram. The expression of HLA-B in peripheral blood T-cells was higher in DCM patients than in the normal group, as verified by qRT-PCR. However, the detailed mechanism needs to be further explored.

摘要

扩张型心肌病(DCM)是心力衰竭的常见原因。本研究旨在筛选与 DCM 相关的免疫浸润相关基因,以探讨潜在的分子机制,为早期诊断和开发新的免疫治疗靶点提供依据。从基因表达综合数据库(GEO)中下载了一个与 DCM 相关的数据集。应用 R 软件对 DCM 患者和健康个体的基因差异分析,并与免疫微卫星数据库比较后筛选出差异表达的免疫相关基因(DEIRGs)。基因功能分析构建了蛋白质相互作用网络(PPI)。采用 CIBERSORT 算法评估 DCM 患者与正常对照之间的免疫浸润情况,利用 MOCDE 应用程序筛选枢纽基因,并在多个数据集进行验证。共筛选出 246 个差异表达基因(adj. P < 0.05,|logFC| > 0.3),共比较了 170 个差异表达免疫相关基因。基因本体论分析显示,有 591 个生物学过程条目显著(adj. P < 0.05),细胞组成有 10 个,分子功能有 39 个;京都基因与基因组百科全书显示 20 个显著条目,主要集中在与免疫相关反应的细胞因子等。结合 PPI 网络交互作用,构建了一个包含 28 个枢纽 DEG 的蛋白质相互作用网络。免疫浸润检测分析显示,DEIRG 主要分布在 T 细胞受体途径,通过分析 T 细胞相关亚途径发现中央记忆 T 细胞发生显著变化,其中 INSR、HLA-B、IFITM1 和 HBEGF 表达显著差异。我们选择了 632 名住院患者进行验证,发现 Nomogram 分析表明 INSR 和 HLA-B 的表达与 DCM 的发展有关。通过 qRT-PCR 验证,DCM 患者外周血 T 细胞中 HLA-B 的表达高于正常组。然而,其详细机制仍需进一步探讨。

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