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棕榈科植物:物种复合体的分子重新评估与物种界限划定

Species on Palms: Molecular Re-Assessment and Species Boundaries Delimitation in the Species Complex.

作者信息

Pereira Diana S, Hilário Sandra, Gonçalves Micael F M, Phillips Alan J L

机构信息

Faculdade de Ciências, Biosystems and Integrative Sciences Institute (BioISI), Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal.

Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208 Porto, Portugal.

出版信息

Microorganisms. 2023 Nov 6;11(11):2717. doi: 10.3390/microorganisms11112717.

Abstract

Due to cryptic diversification, phenotypic plasticity and host associations, multilocus phylogenetic analyses have become the most important tool in accurately identifying and circumscribing species in the genus. However, the application of the genealogical concordance criterion has often been overlooked, ultimately leading to an exponential increase in novel spp. Due to the large number of species, many lineages remain poorly understood under the so-called species complexes. For this reason, a robust delimitation of the species boundaries in is still an ongoing challenge. Therefore, the present study aimed to resolve the species boundaries of the species complex (DASC) by implementing an integrative taxonomic approach. The Genealogical Phylogenetic Species Recognition (GCPSR) principle revealed incongruences between the individual gene genealogies. Moreover, the Poisson Tree Processes' (PTPs) coalescent-based species delimitation models identified three well-delimited subclades represented by the species , and . These results evidence that all species previously described in the subclade are conspecific, which is coherent with the morphological indistinctiveness observed and the absence of reproductive isolation and barriers to gene flow. Thus, 52 spp. are reduced to synonymy under . Recent population expansion and the possibility of incomplete lineage sorting suggested that the subclade may be considered as ongoing evolving lineages under active divergence and speciation. Hence, the genetic diversity and intraspecific variability of in the context of current global climate change and the role of as a pathogen on palm trees and other hosts are also discussed. This study illustrates that species in are highly overestimated, and highlights the relevance of applying an integrative taxonomic approach to accurately circumscribe the species boundaries in the genus .

摘要

由于隐秘分化、表型可塑性和宿主关联,多位点系统发育分析已成为准确识别和界定该属物种的最重要工具。然而,谱系一致性标准的应用常常被忽视,最终导致新物种数量呈指数增长。由于物种数量众多,在所谓的物种复合体下,许多谱系仍未得到充分了解。因此,对该属物种边界进行稳健界定仍是一项持续的挑战。因此,本研究旨在通过实施综合分类学方法来解决物种复合体(DASC)的物种边界问题。谱系系统发育物种识别(GCPSR)原则揭示了各个基因谱系之间的不一致性。此外,泊松树过程(PTP)的基于溯祖的物种界定模型识别出三个界定明确的亚分支,分别由物种 、 和 代表。这些结果证明,先前在 亚分支中描述的所有物种都是同种的,这与观察到的形态不明显以及不存在生殖隔离和基因流动障碍是一致的。因此,52个 物种被归为 的同义词。近期的种群扩张以及不完全谱系分选的可能性表明, 亚分支可能被视为处于活跃分化和物种形成过程中的正在进化的谱系。因此,还讨论了在当前全球气候变化背景下 的遗传多样性和种内变异性,以及 作为棕榈树和其他宿主病原体的作用。本研究表明, 属中的物种被高度高估,并强调了应用综合分类学方法准确界定该属物种边界的相关性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f04/10673533/46907b13750a/microorganisms-11-02717-g001a.jpg

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