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利用整株个体对大型植物响应铵态氮胁迫的转录组分析

Transcriptome Analysis of Macrophytes' Response to Ammonium Nitrogen Stress Using the Whole Plant Individual.

作者信息

Ochieng Wyckliffe Ayoma, Wei Li, Wagutu Godfrey Kinyori, Xian Ling, Muthui Samuel Wamburu, Ogada Stephen, Otieno Duncan Ochieng, Linda Elive Limunga, Liu Fan

机构信息

Core Botanical Gardens/Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China.

Sino-Africa Joint Research Centre, Chinese Academy of Sciences, Wuhan 430074, China.

出版信息

Plants (Basel). 2023 Nov 16;12(22):3875. doi: 10.3390/plants12223875.

DOI:10.3390/plants12223875
PMID:38005772
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10675724/
Abstract

Ammonium toxicity in macrophytes reduces growth and development due to a disrupted metabolism and high carbon requirements for internal ammonium detoxification. To provide more molecular support for ammonium detoxification in the above-ground and below-ground parts of , we separated (using hermetic bags) the aqueous medium surrounding the below-ground from that surrounding the above-ground and explored the genes in these two regions. The results showed an upregulation of asparagine synthetase genes under high ammonium concentrations. Furthermore, the transcriptional down and/or upregulation of other genes involved in nitrogen metabolism, including glutamate dehydrogenase, ammonium transporter, and aspartate aminotransferase in above-ground and below-ground parts were crucial for ammonium homeostasis under high ammonium concentrations. The results suggest that, apart from the primary pathway and alternative pathway, the asparagine metabolic pathway plays a crucial role in ammonium detoxification in macrophytes. Therefore, the complex genetic regulatory network in contributes to its ammonium tolerance, and the above-ground part is the most important in ammonium detoxification. Nevertheless, there is a need to incorporate an open-field experimental setup for a conclusive picture of nitrogen dynamics, toxicity, and the molecular response of in the natural environment.

摘要

大型植物中的铵毒性会因新陈代谢紊乱以及内部铵解毒所需的高碳需求而降低生长和发育。为了为大型植物地上和地下部分的铵解毒提供更多分子支持,我们(使用密封袋)将地下周围的水介质与地上周围的水介质分开,并探索了这两个区域中的基因。结果表明,在高铵浓度下天冬酰胺合成酶基因上调。此外,在高铵浓度下,地上和地下部分中参与氮代谢的其他基因(包括谷氨酸脱氢酶、铵转运蛋白和天冬氨酸转氨酶)的转录下调和/或上调对于铵稳态至关重要。结果表明,除了主要途径和替代途径外,天冬酰胺代谢途径在大型植物的铵解毒中起关键作用。因此,大型植物中复杂的遗传调控网络有助于其耐铵性,并且地上部分在铵解毒中最为重要。然而,需要纳入一个野外实验装置,以获得大型植物在自然环境中的氮动态、毒性和分子反应的确切情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/69748c7e4d47/plants-12-03875-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/e0aa44ebc271/plants-12-03875-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/bc136eeda90d/plants-12-03875-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/c1dd15cd660b/plants-12-03875-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/c46a93661ce8/plants-12-03875-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/51ca04e70c1e/plants-12-03875-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/69748c7e4d47/plants-12-03875-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/e0aa44ebc271/plants-12-03875-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/bc136eeda90d/plants-12-03875-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/c1dd15cd660b/plants-12-03875-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/c46a93661ce8/plants-12-03875-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/51ca04e70c1e/plants-12-03875-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/10675724/69748c7e4d47/plants-12-03875-g006.jpg

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本文引用的文献

1
The Above-Ground Part of Submerged Macrophytes Plays an Important Role in Ammonium Utilization.沉水植物的地上部分在铵利用中起重要作用。
Front Plant Sci. 2022 Jun 6;13:865578. doi: 10.3389/fpls.2022.865578. eCollection 2022.
2
Comparative studies on the response of Zostera marina leaves and roots to ammonium stress and effects on nitrogen metabolism.对氨胁迫下菹草叶片和根系响应的比较研究及其对氮代谢的影响。
Aquat Toxicol. 2021 Nov;240:105965. doi: 10.1016/j.aquatox.2021.105965. Epub 2021 Sep 10.
3
Exploring the ammonium detoxification mechanism of young and mature leaves of the macrophyte Potamogeton lucens.
探究大型水生植物菹草幼叶和成熟叶的铵解毒机制。
Aquat Toxicol. 2021 Aug;237:105879. doi: 10.1016/j.aquatox.2021.105879. Epub 2021 May 28.
4
Internal ammonium excess induces ROS-mediated reactions and causes carbon scarcity in rice.铵态氮过剩会诱导 ROS 介导的反应,并导致水稻中的碳匮乏。
BMC Plant Biol. 2020 Apr 7;20(1):143. doi: 10.1186/s12870-020-02363-x.
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RASflow: an RNA-Seq analysis workflow with Snakemake.RASflow:一个基于 Snakemake 的 RNA-Seq 分析工作流程。
BMC Bioinformatics. 2020 Mar 18;21(1):110. doi: 10.1186/s12859-020-3433-x.
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Glutamate dehydrogenase plays an important role in ammonium detoxification by submerged macrophytes.谷氨酸脱氢酶在沉水植物的铵解毒中起着重要作用。
Sci Total Environ. 2020 Jun 20;722:137859. doi: 10.1016/j.scitotenv.2020.137859. Epub 2020 Mar 11.
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A Cytosolic Protein Kinase STY46 in Arabidopsis thaliana is Involved in Plant Growth and Abiotic Stress Response.拟南芥中的一种胞质蛋白激酶STY46参与植物生长和非生物胁迫响应。
Plants (Basel). 2020 Jan 2;9(1):57. doi: 10.3390/plants9010057.
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Functional Research on Three Presumed Asparagine Synthetase Family Members in Poplar.杨树中三个假定的天冬酰胺合成酶家族成员的功能研究。
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