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来自葡糖基转移酶GTF-SI的白藜芦醇糖基化:对一种GH70家族酶的计算分析

Resveratrol glucosylation by GTF-SI from : computational insights into a GH70 family enzyme.

作者信息

Febres-Molina Camilo, Prat-Resina Xavier, Jaña Gonzalo A

机构信息

Doctorado en Fisicoquímica Molecular, Facultad de Ciencias Exactas, Universidad Andres Bello, Santiago, Chile.

Center for Learning Innovation, University of Minnesota Rochester, Rochester, Minnesota 55904, USA.

出版信息

Org Biomol Chem. 2023 Dec 13;21(48):9591-9602. doi: 10.1039/d3ob01529g.

Abstract

Resveratrol, a polyphenolic compound known for its health benefits but limited by poor water solubility and low bioavailability, represents a valuable substrate for glucosylation by carbohydrate-active enzymes such as glucosyltransferase-SI (GTF-SI). Using quantum mechanics/molecular mechanics (QM/MM) calculations and molecular dynamics simulations, this study reveals the atomic scale dynamics of resveratrol glucosylation by wild-type GTF-SI. This enzyme exhibited an energy barrier of 8.8 kcal mol and an exothermic process, both consistent with experimental data of similar enzymes. We report a concerted and synchronous reaction mechanism for the catalytic step, characterized by an oxocarbenium ion-like transition state, and elucidate a conformational itinerary of the glucosyl moiety (H/E) → [E] → C, which aligns with the consistent patterns observed across enzymes of the GH13 and GH70 families. A key interaction was observed between Asp and the OH group on carbon 6 of the glucosyl moiety, together with a 2.0 kcal mol transition state stabilization by three water molecules within the active site. Comparative insights with the previously studied Q345F SP enzyme system shed light on the unique and common features that govern transglucosylation reactions. Importantly, the calculated activation barriers strongly support the capability of GTF-SI to facilitate resveratrol glucosylation. This study advances our understanding of the transglucosylation reaction and opens up new ways for the glycodiversification of organic compounds such as polyphenols, thus expanding their potential applications in the food, cosmetic, and pharmaceutical industries.

摘要

白藜芦醇是一种以其健康益处而闻名的多酚类化合物,但受限于其较差的水溶性和低生物利用度,是诸如葡萄糖基转移酶 - SI(GTF - SI)等碳水化合物活性酶进行糖基化的重要底物。通过量子力学/分子力学(QM/MM)计算和分子动力学模拟,本研究揭示了野生型GTF - SI催化白藜芦醇糖基化的原子尺度动力学。该酶表现出8.8千卡/摩尔的能垒和放热过程,这两者均与类似酶的实验数据一致。我们报道了催化步骤的协同同步反应机制,其特征为类氧鎓离子过渡态,并阐明了糖基部分的构象路径(H/E)→[E]→C,这与在GH13和GH70家族的酶中观察到的一致模式相符。观察到天冬氨酸与糖基部分碳6上的羟基之间存在关键相互作用,同时活性位点内的三个水分子使过渡态稳定了2.0千卡/摩尔。与先前研究的Q345F SP酶系统的比较见解揭示了控制转糖基化反应的独特和共同特征。重要的是,计算出的活化能垒有力地支持了GTF - SI促进白藜芦醇糖基化的能力。本研究增进了我们对转糖基化反应的理解,并为多酚等有机化合物的糖基多样化开辟了新途径,从而扩大了它们在食品、化妆品和制药行业的潜在应用。

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