Grosberg A Iu, Shakhnovich E I
Biofizika. 1986 Nov-Dec;31(6):1045-57.
A new approach to the problem of correspondence between primary structures of polypeptides and their tertiary structures is presented. This approach is based on the following statement of the problem: what will be the statistical properties of tertiary structures provided that the statistical properties of primary structures (e. g. the ratio of polar and unpolar residues) are given? It is discussed whether such statement is useful for the investigation of the prebiological evolution and protein folding. It is emphasized that the basic point here is to determine the configurational entropy of the chain, i. e., the number of foldings which lead to a given density distribution space. Hence, the auxiliary problem of the ideal heteropolymer collapse in the external field is considered. This problem is investigated numerically in the case when the field is localized in the small region in space. It is shown that such geometrical characteristics as the size of a globule are not sensitive to the details of primary structure when the chain is a random coil, and become sensitive to such details in the opposite globular case. These characteristics in the globular state can be described by the stable probability distribution function which does not depend upon chain length. Geometric characteristics of the chain exhibit especially strong dependence upon the primary structure in the region of coil-globule transition which is of the second order for the ensemble of chains.
本文提出了一种解决多肽一级结构与其三级结构对应问题的新方法。该方法基于以下问题陈述:如果给定一级结构的统计特性(例如极性和非极性残基的比例),三级结构的统计特性会是怎样的?讨论了这种陈述对于研究前生物进化和蛋白质折叠是否有用。强调这里的关键点是确定链的构型熵,即导致给定密度分布空间的折叠数。因此,考虑了外部场中理想杂聚物塌缩的辅助问题。在外部场局限于空间小区域的情况下,对该问题进行了数值研究。结果表明,当链为无规卷曲时,诸如球状体大小等几何特征对一级结构的细节不敏感,而在相反的球状情况下则对这些细节敏感。球状状态下的这些特征可以用不依赖于链长的稳定概率分布函数来描述。链的几何特征在链的系综为二级的线团 - 球状转变区域对一级结构表现出特别强烈的依赖性。