Key Laboratory of Sichuan Province for Bamboo Pests Control and Resource Development, Leshan Normal University, No. 778 Binhe Road, Shizhong District, Leshan, Sichuan 614000, China.
Database (Oxford). 2023 Nov 28;2023. doi: 10.1093/database/baad086.
With the continuous upgrading of high-throughput sequencing technology, a large amount of biological genome data has been deciphered and published. The research on functional genes of biological genomes urgently needs a collection of service websites with user-friendly and full annotation functions for a variety of gene function annotation tools. In this study, iCAZyGFADB, which is a database website integrating nine gene function annotation tools, was perfectly developed to meet the needs of biological genome functional annotation. Its nine gene function annotation tools were Carbohydrate-Active Enzymes (CAZyme) annotation, Gene Ontology (GO) annotation, Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation, Cluster of Orthologous Gene (COG) annotation, Evolutionary Genealogy of Genes: Non-supervised Orthologous Groups (eggNOG) annotation, SwissProt annotation, Pfam annotation, KOG annotation and Animal Transcription Factor DataBase (AnimalTFDB) annotation. It has three advantages. First, it is superior to gene function annotation of other biological cloud analysis platforms and runs very fast. Second, all gene annotation functions of the website are free and open to users. Third, it can annotate eight gene functions (GO, KEGG, COG, eggNOG, SwissProt, Pfam, KOG and AnimalTFDB annotation) of a single species at the same time, while other cloud platforms do not have the ability or need to charge to open for users to complete the annotation of eight gene functions at the same time. Moreover, the development and operation of our database will provide great help for gene function annotation research and significantly improve the efficiency of genome function research and reduce the cost of bioinformatics analysis. Genomic functional annotation researchers can access this database through the following website: http://www.icazygfadb.org.cn/. Database URL: http://www.icazygfadb.org.cn/.
随着高通量测序技术的不断升级,大量的生物基因组数据被破译并公布。生物基因组功能基因的研究迫切需要一个收集了各种基因功能注释工具、用户友好且具有完整注释功能的服务网站。本研究开发了一个集成了 9 种基因功能注释工具的数据库网站 iCAZyGFADB,以满足生物基因组功能注释的需求。其 9 种基因功能注释工具分别为碳水化合物活性酶(CAZyme)注释、基因本体论(GO)注释、京都基因与基因组百科全书(KEGG)注释、直系同源基因簇(COG)注释、非监督直系同源群基因进化(eggNOG)注释、SwissProt 注释、Pfam 注释、COG 注释和动物转录因子数据库(AnimalTFDB)注释。该数据库具有三个优势。首先,它优于其他生物云分析平台的基因功能注释,运行速度非常快。其次,网站的所有基因注释功能都是免费向用户开放的。第三,它可以同时注释一个物种的 8 种基因功能(GO、KEGG、COG、eggNOG、SwissProt、Pfam、COG 和 AnimalTFDB 注释),而其他云平台没有同时为用户完成 8 种基因功能注释的能力或需要收费。此外,该数据库的开发和运行将为基因功能注释研究提供巨大帮助,显著提高基因组功能研究的效率,降低生物信息学分析的成本。基因组功能注释研究人员可以通过以下网址访问该数据库:http://www.icazygfadb.org.cn/。数据库网址:http://www.icazygfadb.org.cn/。