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3DGAUnet:一种基于3D U-Net生成器的3D生成对抗网络,用于实现胰腺癌临床肿瘤图像数据的准确有效合成。

3DGAUnet: 3D Generative Adversarial Networks with a 3D U-Net Based Generator to Achieve the Accurate and Effective Synthesis of Clinical Tumor Image Data for Pancreatic Cancer.

作者信息

Shi Yu, Tang Hannah, Baine Michael J, Hollingsworth Michael A, Du Huijing, Zheng Dandan, Zhang Chi, Yu Hongfeng

机构信息

School of Computing, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.

School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.

出版信息

Cancers (Basel). 2023 Nov 21;15(23):5496. doi: 10.3390/cancers15235496.

Abstract

Pancreatic ductal adenocarcinoma (PDAC) presents a critical global health challenge, and early detection is crucial for improving the 5-year survival rate. Recent medical imaging and computational algorithm advances offer potential solutions for early diagnosis. Deep learning, particularly in the form of convolutional neural networks (CNNs), has demonstrated success in medical image analysis tasks, including classification and segmentation. However, the limited availability of clinical data for training purposes continues to represent a significant obstacle. Data augmentation, generative adversarial networks (GANs), and cross-validation are potential techniques to address this limitation and improve model performance, but effective solutions are still rare for 3D PDAC, where the contrast is especially poor, owing to the high heterogeneity in both tumor and background tissues. In this study, we developed a new GAN-based model, named 3DGAUnet, for generating realistic 3D CT images of PDAC tumors and pancreatic tissue, which can generate the inter-slice connection data that the existing 2D CT image synthesis models lack. The transition to 3D models allowed the preservation of contextual information from adjacent slices, improving efficiency and accuracy, especially for the poor-contrast challenging case of PDAC. PDAC's challenging characteristics, such as an iso-attenuating or hypodense appearance and lack of well-defined margins, make tumor shape and texture learning challenging. To overcome these challenges and improve the performance of 3D GAN models, our innovation was to develop a 3D U-Net architecture for the generator, to improve shape and texture learning for PDAC tumors and pancreatic tissue. Thorough examination and validation across many datasets were conducted on the developed 3D GAN model, to ascertain the efficacy and applicability of the model in clinical contexts. Our approach offers a promising path for tackling the urgent requirement for creative and synergistic methods to combat PDAC. The development of this GAN-based model has the potential to alleviate data scarcity issues, elevate the quality of synthesized data, and thereby facilitate the progression of deep learning models, to enhance the accuracy and early detection of PDAC tumors, which could profoundly impact patient outcomes. Furthermore, the model has the potential to be adapted to other types of solid tumors, hence making significant contributions to the field of medical imaging in terms of image processing models.

摘要

胰腺导管腺癌(PDAC)是一项严峻的全球健康挑战,早期检测对于提高5年生存率至关重要。近期医学成像和计算算法的进展为早期诊断提供了潜在解决方案。深度学习,特别是卷积神经网络(CNN)形式,已在医学图像分析任务(包括分类和分割)中取得成功。然而,用于训练的临床数据有限,仍然是一个重大障碍。数据增强、生成对抗网络(GAN)和交叉验证是解决这一限制并提高模型性能的潜在技术,但对于3D PDAC,由于肿瘤和背景组织的高度异质性,对比度特别差,有效的解决方案仍然很少。在本研究中,我们开发了一种基于GAN的新模型,名为3DGAUnet,用于生成PDAC肿瘤和胰腺组织的逼真3D CT图像,该模型可以生成现有2D CT图像合成模型所缺乏的层间连接数据。向3D模型的转变允许保留相邻切片的上下文信息,提高了效率和准确性,特别是对于PDAC对比度差的具有挑战性的情况。PDAC具有挑战性的特征,如实质等密度或低密度表现以及缺乏清晰界定的边缘,使得肿瘤形状和纹理学习具有挑战性。为了克服这些挑战并提高3D GAN模型的性能,我们的创新之处在于为生成器开发一种3D U-Net架构,以改善PDAC肿瘤和胰腺组织的形状和纹理学习。对开发的3D GAN模型在多个数据集上进行了全面检查和验证,以确定该模型在临床环境中的有效性和适用性。我们的方法为满足对抗PDAC的创新和协同方法的迫切需求提供了一条有希望的途径。这种基于GAN的模型的开发有可能缓解数据稀缺问题,提高合成数据的质量,从而促进深度学习模型的发展,提高PDAC肿瘤的检测准确性和早期检测能力,这可能对患者预后产生深远影响。此外,该模型有可能适用于其他类型的实体肿瘤,因此在图像处理模型方面对医学成像领域做出重大贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4121/10705188/374843a3e025/cancers-15-05496-g001.jpg

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