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脂代谢、甲基化异常与骨质疏松症:基于孟德尔随机化的多组学研究。

Lipid Metabolism, Methylation Aberrant, and Osteoporosis: A Multi-omics Study Based on Mendelian Randomization.

机构信息

Third Hospital of Shanxi Medical University, Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Tongji Shanxi Hospital, Taiyuan, 030032, China.

Taiyuan Central Hospital, Ninth Hospital of Shanxi Medical University, Southern Fendong Road 256, Taiyuan, 030009, Shanxi, China.

出版信息

Calcif Tissue Int. 2024 Feb;114(2):147-156. doi: 10.1007/s00223-023-01160-6. Epub 2023 Dec 10.

Abstract

BACKGROUND

Observational studies have shown a causal association between dyslipidemia and osteoporosis, but the genetic causation and complete mechanism of which are uncertain. The disadvantage of previous observational studies is that they are susceptible to confounding factors and bias, that makes it difficult to infer a causal link between those two diseases. Abnormal epigenetic modifications, represented by DNA methylation, are important causes of many diseases. However, there are no studies showing a bridging role for methylation modifications in blood lipid metabolism and osteoporosis.

METHODS

SNPs for lipid profile (Blood VLDL cholesterol (VLDL-C), blood LDL cholesterol (LDL-C), blood HDL cholesterol (HDL-C), blood triglycerides (TG), diagnosed pure hypercholesterolaemia, blood apolipoprotein B (Apo B), blood apolipoprotein A1(Apo A1)), and bone mineral density (BMD) in different body parts (Heel BMD, lumbar BMD, whole-body BMD, femoral neck BMD) were obtained from large meta-analyses of genome-wide association studies as instrumental variables for two-sample Mendelian randomization. Assessment of the genetic effects of lipid profile-associated methylation sites and bone mineral density was carried out using the summary-data-based Mendelian randomization (SMR) method.

RESULTS

Two-sample Mendelian randomization showed that there was a negative causal association between hypercholesterolaemia and heel BMD (p = 0.0103, OR = 0.4590), and total body BMD (p = 0.0002, OR = 0.2826). LDL-C had a negative causal association with heel BMD (p = 8.68E-05, OR = 0.9586). VLDL-C had a negative causal association with heel BMD (p = 0.035, OR = 0.9484), lumbar BMD (p = 0.0316, OR = 0.9356), and total body BMD (p = 0.0035, OR = 0.9484). HDL-C had a negative causal association with heel BMD (p = 1.25E-05, OR = 0.9548), lumbar BMD (p = 0.0129, OR = 0.9358), and total body BMD (p = 0.0399, OR = 0.9644). Apo B had a negative causal association with heel BMD (p = 0.0001, OR = 0.9647). Apo A1 had a negative causal association with heel BMD (p = 0.0132, OR = 0.9746) and lumbar BMD (p = 0.0058, OR = 0.9261). The p-values of all positive results corrected by the FDR method remained significant and sensitivity analysis showed that there was no horizontal pleiotropy in the results despite the heterogeneity in some results. SMR identified 3 methylation sites associated with lipid profiles in the presence of genetic effects on BMD: cg15707428(GREB1), cg16000331(SREBF2), cg14364472(NOTCH1).

CONCLUSION

Our study provides insights into the potential causal links and co-pathogenesis between dyslipidemia and osteoporosis. The genetic effects of dyslipidaemia on osteoporosis may be related to certain aberrant methylation genetic modifications.

摘要

背景

观察性研究表明血脂异常与骨质疏松症之间存在因果关系,但遗传因果关系和完整的机制尚不确定。以前观察性研究的缺点是容易受到混杂因素和偏倚的影响,这使得难以推断这两种疾病之间的因果关系。以 DNA 甲基化为代表的异常表观遗传修饰是许多疾病的重要原因。然而,目前尚无研究表明甲基化修饰在血脂代谢和骨质疏松症之间具有桥接作用。

方法

从全基因组关联研究的大型荟萃分析中获得了血脂谱(VLDL-C、LDL-C、HDL-C、TG、确诊纯高胆固醇血症、载脂蛋白 B (Apo B)、载脂蛋白 A1(Apo A1))和不同身体部位的骨密度(足跟骨密度、腰椎骨密度、全身骨密度、股骨颈骨密度)的 SNP,作为两样本孟德尔随机化的工具变量。使用基于汇总数据的孟德尔随机化(SMR)方法评估与血脂谱相关的甲基化位点和骨密度的遗传效应。

结果

两样本孟德尔随机化显示高胆固醇血症与足跟骨密度(p=0.0103,OR=0.4590)和全身骨密度(p=0.0002,OR=0.2826)呈负因果关系。LDL-C 与足跟骨密度呈负因果关系(p=8.68E-05,OR=0.9586)。VLDL-C 与足跟骨密度(p=0.035,OR=0.9484)、腰椎骨密度(p=0.0316,OR=0.9356)和全身骨密度(p=0.0035,OR=0.9484)呈负因果关系。HDL-C 与足跟骨密度(p=1.25E-05,OR=0.9548)、腰椎骨密度(p=0.0129,OR=0.9358)和全身骨密度(p=0.0399,OR=0.9644)呈负因果关系。Apo B 与足跟骨密度呈负因果关系(p=0.0001,OR=0.9647)。Apo A1 与足跟骨密度(p=0.0132,OR=0.9746)和腰椎骨密度(p=0.0058,OR=0.9261)呈负因果关系。通过 FDR 方法校正后的所有阳性结果的 p 值仍然显著,敏感性分析表明,尽管某些结果存在异质性,但结果没有水平的偏倚。SMR 在存在对 BMD 遗传效应的情况下,确定了与血脂谱相关的 3 个甲基化位点:cg15707428(GREB1)、cg16000331(SREBF2)、cg14364472(NOTCH1)。

结论

本研究深入了解了血脂异常与骨质疏松症之间潜在的因果关系和共同发病机制。血脂异常对骨质疏松症的遗传影响可能与某些异常的甲基化遗传修饰有关。

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