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探讨丹参在结直肠癌中的药理和分子机制:网络药理学和分子对接研究。

Exploring the pharmacological and molecular mechanisms of Salvia chinensis Benth in colorectal cancer: A network pharmacology and molecular docking study.

机构信息

Department of General Surgery, Hebei Key Laboratory of CRC Precision Diagnosis and Treatment, The First Hospital of Hebei Medical University, Shijiazhuang, China.

Department of Pathology, The First Hospital of Hebei Medical University, Shijiazhuang, China.

出版信息

Medicine (Baltimore). 2023 Dec 15;102(50):e36602. doi: 10.1097/MD.0000000000036602.

DOI:10.1097/MD.0000000000036602
PMID:38115259
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10727650/
Abstract

While Salvia chinensis Benth (commonly known as "Shijianchuan" in Chinese, and abbreviated as SJC) is commonly used in adjuvant therapy for colorectal cancer (CRC) in traditional Chinese medicine, its mechanism of action remains unclear. In this study, Initially, we examined the impact of SJC on CRC cells in an in vitro setting. Next, we initially retrieved the primary active components and targets of SJC from databases such as TCMSP and existing literature. Subsequently, we integrated differential gene expression data from the GEO database and collected CRC-related targets from resources like DisGeNET. The matching of these datasets enabled the identification of SJC-CRC targets. We constructed a protein-protein interaction network and identified core targets through topological analysis. GO and KEGG enrichment analyses were performed using clusterProfiler. We established networks linking traditional Chinese medicine components to targets and core targets to signaling pathways. Additionally, we performed molecular docking to validate interactions between the main compounds and targets, and employed Western blot analysis to explore how the major components of SJC affect crucial signaling pathways. In this study, SJC inhibited the viability of HCT-116 and HT-29 cells. We identified a total of 11 active components in SJC along with 317 target genes. Among these, there were 8612 target genes associated with CRC, and we successfully matched 276 SJC-CRC target genes. Through topological analysis of the protein-protein interaction network, we pinpointed 20 core targets. It was revealed that SJC effects are linked to genes governing processes like cell apoptosis, proliferation, hypoxia, oxidative stress, and signaling pathways such as PI3K-Akt through GO and KEGG pathway enrichment analyses. Additionally, we applied molecular docking techniques and observed that the majority of active compounds displayed robust binding affinity with the selected targets. In vitro experiments suggested that SJC and its key component, Ursolic acid, may exert its anti-CRC effects by modulating the core PI3K/AKT signaling pathway through inhibiting the phosphorylation of the target Akt1. This discovery is consistent with the predictions derived from network pharmacology methods. This study marks the inaugural utilization of bioinformatics methods in conjunction with in vitro experiments to comprehensively investigate the pharmacological and molecular mechanisms responsible for SJC anti-CRC effects.

摘要

虽然丹参(通常称为“石见穿”,简称 SJC)在中医辅助治疗结直肠癌(CRC)中被广泛使用,但它的作用机制仍不清楚。在这项研究中,我们首先在体外环境中研究了 SJC 对 CRC 细胞的影响。接下来,我们从 TCMSP 和现有文献等数据库中初步检索 SJC 的主要活性成分和靶点。随后,我们整合了 GEO 数据库中的差异基因表达数据,并从 DisGeNET 等资源中收集了 CRC 相关靶点。这些数据集的匹配确定了 SJC-CRC 靶点。我们构建了一个蛋白质-蛋白质相互作用网络,并通过拓扑分析确定了核心靶点。使用 clusterProfiler 进行 GO 和 KEGG 富集分析。我们建立了连接中药成分与靶点和核心靶点与信号通路的网络。此外,我们进行了分子对接以验证主要化合物与靶点之间的相互作用,并通过 Western blot 分析探讨了 SJC 的主要成分如何影响关键信号通路。在这项研究中,SJC 抑制了 HCT-116 和 HT-29 细胞的活力。我们确定了 SJC 中的 11 种活性成分和 317 个靶基因。其中,有 8612 个靶基因与 CRC 相关,我们成功匹配了 276 个 SJC-CRC 靶基因。通过蛋白质-蛋白质相互作用网络的拓扑分析,我们确定了 20 个核心靶点。通过 GO 和 KEGG 通路富集分析,发现 SJC 的作用与调控细胞凋亡、增殖、缺氧、氧化应激和 PI3K-Akt 等信号通路的基因有关。此外,我们应用分子对接技术观察到大多数活性化合物与所选靶点具有较强的结合亲和力。体外实验表明,SJC 及其关键成分熊果酸可能通过抑制靶标 Akt1 的磷酸化来调节核心 PI3K/AKT 信号通路,从而发挥抗 CRC 作用。这一发现与网络药理学方法的预测结果一致。这项研究标志着首次结合体外实验,运用生物信息学方法全面研究 SJC 抗 CRC 作用的药理学和分子机制。

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