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基于实时 PCR 的利用残余干血斑进行纯合缺失筛查

Real-Time PCR-Based Screening for Homozygous Deletion Using Residual Dried Blood Spots.

机构信息

Faculty of Nutrition, Kobe Gakuin University, 518 Arise, Ikawadani-cho, Nishi-ku, Kobe 651-2180, Japan.

Division of Physiology, Shinko Hospital, 1-4-47 Wakinohama-cho, Chuo-ku, Kobe 651-0072, Japan.

出版信息

Genes (Basel). 2023 Nov 29;14(12):2159. doi: 10.3390/genes14122159.

DOI:10.3390/genes14122159
PMID:38136980
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10742981/
Abstract

The survival motor neuron 2 () gene is a recognized modifier gene of spinal muscular atrophy (SMA). However, our knowledge about the role of -other than its modification of SMA phenotypes-is very limited. Discussions regarding the relationship between homozygous deletion and motor neuron diseases, including amyotrophic lateral sclerosis, have been mainly based on retrospective epidemiological studies of the diseases, and the precise relationship remains inconclusive. In the present study, we first estimated that the frequency of homozygous deletion was ~1 in 20 in Japan. We then established a real-time polymerase chain reaction (PCR)-based screening method using residual dried blood spots to identify infants with homozygous deletion. This method can be applied to a future prospective cohort study to clarify the relationship between homozygous deletion and motor neuron diseases. In our real-time PCR experiment, both PCR (low annealing temperatures) and blood (high hematocrit values and low white blood cell counts) conditions were associated with incorrect results (i.e., false negatives and positives). Together, our findings not only help to elucidate the role of , but also aid in our understanding of the pitfalls of current SMA newborn screening programs for detecting homozygous deletions.

摘要

运动神经元存活 2 号()基因是公认的脊髓性肌萎缩症(SMA)修饰基因。然而,我们对其除了修饰 SMA 表型之外的作用知之甚少。关于纯合缺失与包括肌萎缩侧索硬化症在内的运动神经元疾病之间关系的讨论主要基于对这些疾病的回顾性流行病学研究,其确切关系仍不确定。在本研究中,我们首先估计纯合缺失的频率在日本约为 1/20。然后,我们建立了一种基于实时聚合酶链反应(PCR)的筛查方法,使用残留的干血斑来识别纯合缺失的婴儿。该方法可应用于未来的前瞻性队列研究,以阐明纯合缺失与运动神经元疾病之间的关系。在我们的实时 PCR 实验中,PCR(低退火温度)和血液(高红细胞压积值和低白细胞计数)条件均与错误结果(即假阴性和阳性)相关。总之,我们的研究结果不仅有助于阐明的作用,还帮助我们了解当前用于检测纯合缺失的 SMA 新生儿筛查程序的缺陷。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/a108ced9b05a/genes-14-02159-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/9a302562f064/genes-14-02159-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/561e4dd5a081/genes-14-02159-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/93500d561a6d/genes-14-02159-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/84a4501180e1/genes-14-02159-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/a108ced9b05a/genes-14-02159-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/9a302562f064/genes-14-02159-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/561e4dd5a081/genes-14-02159-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/93500d561a6d/genes-14-02159-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/84a4501180e1/genes-14-02159-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7436/10742981/a108ced9b05a/genes-14-02159-g005.jpg

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本文引用的文献

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Spinal Muscular Atrophy: The Past, Present, and Future of Diagnosis and Treatment.脊髓性肌萎缩症:诊断和治疗的过去、现在和未来。
Int J Mol Sci. 2023 Jul 26;24(15):11939. doi: 10.3390/ijms241511939.
2
PCR-Based Screening of Spinal Muscular Atrophy for Newborn Infants in Hyogo Prefecture, Japan.日本兵库县基于 PCR 的新生儿脊髓性肌萎缩症筛查。
Genes (Basel). 2022 Nov 14;13(11):2110. doi: 10.3390/genes13112110.
3
Newborn screening programs for spinal muscular atrophy worldwide: Where we stand and where to go.全球脊髓性肌萎缩症新生儿筛查计划:现状与展望。
Neuromuscul Disord. 2021 Jun;31(6):574-582. doi: 10.1016/j.nmd.2021.03.007. Epub 2021 Apr 7.
4
Dried Blood Spot Screening System for Spinal Muscular Atrophy with Allele-Specific Polymerase Chain Reaction and Melting Peak Analysis.干血斑脊髓性肌萎缩症等位基因特异性聚合酶链反应和熔解峰分析筛查系统。
Genet Test Mol Biomarkers. 2021 Apr;25(4):293-301. doi: 10.1089/gtmb.2020.0312.
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A Novel System for Spinal Muscular Atrophy Screening in Newborns: Japanese Pilot Study.一种用于新生儿脊髓性肌萎缩症筛查的新型系统:日本试点研究。
Int J Neonatal Screen. 2019 Nov 12;5(4):41. doi: 10.3390/ijns5040041. eCollection 2019 Dec.
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High-throughput genetic newborn screening for spinal muscular atrophy by rapid nucleic acid extraction from dried blood spots and 384-well qPCR.高通量基因新生儿脊髓性肌萎缩症筛查:快速从干血斑提取核酸和 384 孔 qPCR。
Eur J Hum Genet. 2020 Jan;28(1):23-30. doi: 10.1038/s41431-019-0476-4. Epub 2019 Jul 30.
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Inhibition mechanisms of hemoglobin, immunoglobulin G, and whole blood in digital and real-time PCR.血红蛋白、免疫球蛋白 G 和全血在数字和实时 PCR 中的抑制机制。
Anal Bioanal Chem. 2018 Apr;410(10):2569-2583. doi: 10.1007/s00216-018-0931-z. Epub 2018 Mar 5.
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J Pediatr. 2017 Nov;190:124-129.e1. doi: 10.1016/j.jpeds.2017.06.042. Epub 2017 Jul 12.
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