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SimplyFire:用于分析突触事件的开源、可定制软件应用程序。

SimplyFire: An Open-Source, Customizable Software Application for the Analysis of Synaptic Events.

机构信息

The Buck Institute for Research on Aging, Novato 94947, California.

Gladstone Institute of Neurological Disease, Gladstone Institutes, San Francisco 94158, California.

出版信息

eNeuro. 2024 Jan 22;11(1). doi: 10.1523/ENEURO.0326-23.2023. Print 2024 Jan.

Abstract

We have developed an open-source software for neuroscientists to analyze electrophysiological recordings. Named SimplyFire, the software gives the users the flexibility to analyze a variety of recordings using an interactive graphical user interface or as an importable Python package. The software features a simple plugin structure that allows users to create and deploy various electrophysiology analysis tools. SimplyFire is pre-packaged with tools commonly used in electrophysiology, such as noise filtering, trace averaging, miniature analysis, and trace exporting. We discuss in detail the algorithm behind the different features of the analysis tool. We verify the accuracy of the algorithm by testing the software using computer-generated traces with known true values of the events. SimplyFire will be distributed under the GPLv3.0 license. The open nature of this software will allow interested investigators to modify and expand the software for additional capabilities as needed. We believe this software will not only compete with commercially available software packages but will also present a powerful tool to meet the current and unmet needs of electrophysiologists.

摘要

我们开发了一款开源软件,供神经科学家分析电生理记录。该软件名为 SimplyFire,它为用户提供了使用交互式图形用户界面或可导入的 Python 包来分析各种记录的灵活性。该软件具有简单的插件结构,允许用户创建和部署各种电生理学分析工具。SimplyFire 预包装了电生理学中常用的工具,如噪声滤波、轨迹平均、微型分析和轨迹导出。我们详细讨论了分析工具不同功能背后的算法。我们通过使用具有已知事件真实值的计算机生成轨迹来测试软件,从而验证算法的准确性。SimplyFire 将根据 GPLv3.0 许可证进行分发。该软件的开放性将允许感兴趣的研究人员根据需要修改和扩展软件以获得额外功能。我们相信这款软件不仅将与商业可用的软件包竞争,还将提供一个强大的工具来满足电生理学家当前和未满足的需求。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a255/10849045/269e0927e474/eneuro-11-ENEURO.0326-23.2023-g001.jpg

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