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一个在细菌门 Aquificota 中的属似乎是新西兰特有的。

A genus in the bacterial phylum Aquificota appears to be endemic to Aotearoa-New Zealand.

机构信息

Thermophile Research Unit, Te Aka Mātuatua | School of Science, Te Whare Wānanga o Waikato | University of Waikato, Hamilton, 3240, Aotearoa New Zealand.

Te Tari Pūhanga Tukanga Matū | Department of Chemical and Process Engineering, Te Whare Wānanga o Waitaha | University of Canterbury, Christchurch, 8140, Aotearoa New Zealand.

出版信息

Nat Commun. 2024 Jan 2;15(1):179. doi: 10.1038/s41467-023-43960-2.

Abstract

Allopatric speciation has been difficult to examine among microorganisms, with prior reports of endemism restricted to sub-genus level taxa. Previous microbial community analysis via 16S rRNA gene sequencing of 925 geothermal springs from the Taupō Volcanic Zone (TVZ), Aotearoa-New Zealand, revealed widespread distribution and abundance of a single bacterial genus across 686 of these ecosystems (pH 1.2-9.6 and 17.4-99.8 °C). Here, we present evidence to suggest that this genus, Venenivibrio (phylum Aquificota), is endemic to Aotearoa-New Zealand. A specific environmental niche that increases habitat isolation was identified, with maximal read abundance of Venenivibrio occurring at pH 4-6, 50-70 °C, and low oxidation-reduction potentials. This was further highlighted by genomic and culture-based analyses of the only characterised species for the genus, Venenivibrio stagnispumantis CP.B2, which confirmed a chemolithoautotrophic metabolism dependent on hydrogen oxidation. While similarity between Venenivibrio populations illustrated that dispersal is not limited across the TVZ, extensive amplicon, metagenomic, and phylogenomic analyses of global microbial communities from DNA sequence databases indicates Venenivibrio is geographically restricted to the Aotearoa-New Zealand archipelago. We conclude that geographic isolation, complemented by physicochemical constraints, has resulted in the establishment of an endemic bacterial genus.

摘要

异域物种形成在微生物中一直难以研究,先前的特有种报告仅限于亚属水平的分类单元。先前通过对来自新西兰奥克兰陶波火山带 (TVZ) 的 925 个温泉的 16S rRNA 基因测序进行的微生物群落分析表明,在这些生态系统中的 686 个(pH 值 1.2-9.6 和 17.4-99.8°C)中,单一细菌属广泛分布且丰度较高。在这里,我们提供的证据表明,这个属,Venenivibrio(门 Aquificota),是新西兰的特有种。确定了一个增加栖息地隔离的特定环境小生境,Venenivibrio 的最大读取丰度出现在 pH 值 4-6、50-70°C 和低氧化还原电位时。这一点通过对该属唯一特征种 Venenivibrio stagnispumantis CP.B2 的基因组和基于培养的分析进一步得到了强调,该分析证实了一种依赖于氢气氧化的化能自养代谢。尽管 Venenivibrio 种群之间的相似性表明扩散不受 TVZ 的限制,但对来自 DNA 序列数据库的全球微生物群落的广泛扩增子、宏基因组和系统基因组分析表明,Venenivibrio 地理上仅限于新西兰群岛。我们得出结论,地理隔离加上物理化学限制导致了一个特有细菌属的建立。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/10762115/985ccd2e8c9f/41467_2023_43960_Fig1_HTML.jpg

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