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路易体痴呆神经病理学确诊病例中的差异甲基化分析。

Differential methylation analysis in neuropathologically confirmed dementia with Lewy bodies.

机构信息

Neurodegenerative Diseases Research Unit, National Institute of Neurological Disorders and Stroke, Bethesda, MD, USA.

Laboratory of Precision Environmental Health, Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA.

出版信息

Commun Biol. 2024 Jan 5;7(1):35. doi: 10.1038/s42003-023-05725-x.

Abstract

Dementia with Lewy bodies (DLB) is a common form of dementia in the elderly population. We performed genome-wide DNA methylation mapping of cerebellar tissue from pathologically confirmed DLB cases and controls to study the epigenetic profile of this understudied disease. After quality control filtering, 728,197 CpG-sites in 278 cases and 172 controls were available for the analysis. We undertook an epigenome-wide association study, which found a differential methylation signature in DLB cases. Our analysis identified seven differentially methylated probes and three regions associated with DLB. The most significant CpGs were located in ARSB (cg16086807), LINC00173 (cg18800161), and MGRN1 (cg16250093). Functional enrichment evaluations found widespread epigenetic dysregulation in genes associated with neuron-to-neuron synapse, postsynaptic specialization, postsynaptic density, and CTCF-mediated synaptic plasticity. In conclusion, our study highlights the potential importance of epigenetic alterations in the pathogenesis of DLB and provides insights into the modified genes, regions and pathways that may guide therapeutic developments.

摘要

路易体痴呆症(DLB)是老年人中常见的一种痴呆症形式。我们对经病理学证实的 DLB 病例和对照者的小脑组织进行了全基因组 DNA 甲基化图谱分析,以研究这种研究不足的疾病的表观遗传特征。经过质量控制过滤后,278 例病例和 172 例对照者中共有 728,197 个 CpG 位点可供分析。我们进行了全基因组关联研究,发现了 DLB 病例中的差异甲基化特征。我们的分析确定了七个差异甲基化探针和三个与 DLB 相关的区域。最显著的 CpG 位于 ARSB(cg16086807)、LINC00173(cg18800161)和 MGRN1(cg16250093)。功能富集评估发现与神经元到神经元突触、突触后特化、突触后密度以及 CTCF 介导的突触可塑性相关的基因存在广泛的表观遗传失调。总之,我们的研究强调了表观遗传改变在 DLB 发病机制中的潜在重要性,并为可能指导治疗发展的修饰基因、区域和途径提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8662/10770032/4c06b655038e/42003_2023_5725_Fig1_HTML.jpg

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