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黑色素瘤中的 PANoptosis 相关特征:转录组图谱与临床预后预测。

PANoptosis-related signature in melanoma: Transcriptomic mapping and clinical prognostication.

机构信息

Department of Plastic Surgery, Xiangya Hospital, Central South University, Changsha, China.

Department of Lung Cancer Surgery, Tianjin Medical University Cancer Institute and Hospital, Tianjin, China.

出版信息

Environ Toxicol. 2024 May;39(5):2545-2559. doi: 10.1002/tox.24126. Epub 2024 Jan 8.

DOI:10.1002/tox.24126
PMID:38189554
Abstract

Programmed cell death plays a pivotal role in maintaining tissue homeostasis, and recent advancements in cell biology have uncovered PANoptosis-a novel paradigm integrating pyroptosis, apoptosis, and necroptosis. This study investigates the implications of PANoptosis in melanoma, a formidable skin cancer known for its metastatic potential and resistance to conventional therapies. Leveraging bulk and single-cell transcriptome analyses, machine learning modeling, and immune correlation assessments, we unveil the molecular intricacies of PANoptosis in melanoma. Single-cell sequencing identifies diverse cell types involved in PANoptosis, while bulk transcriptome analysis reveals key gene sets correlated with PANoptosis. Machine learning algorithms construct a robust prognostic model, demonstrating consistent predictive power across diverse cohorts. Patients with different cohorts can be divided into high-risk and low-risk groups according to this PANoptosis score, with the high-risk group having a significantly worse prognosis. Immune correlation analyses unveil a link between PANoptosis and immunotherapy response, with potential therapeutic implications. Mutation analysis and enrichment studies provide insights into the mutational landscape associated with PANoptosis. Finally, we used cell experiments to verify the expression and function of key gene PARVA, showing that PARVA was highly expressed in melanoma cell lines, and after PARVA is knocked down, cell invasion, migration, and colony formation ability were significantly decreased. This study advances our understanding of PANoptosis in melanoma, offering a comprehensive framework for targeted therapeutic interventions and personalized medicine strategies in combating this aggressive malignancy.

摘要

程序性细胞死亡在维持组织内稳态方面起着关键作用,细胞生物学的最新进展揭示了一种新的范式——PANoptosis,它整合了细胞焦亡、细胞凋亡和坏死性凋亡。本研究探讨了 PANoptosis 在黑色素瘤中的意义,黑色素瘤是一种具有转移性和对传统疗法耐药性的严重皮肤癌。本研究利用批量和单细胞转录组分析、机器学习模型和免疫相关性评估,揭示了黑色素瘤中 PANoptosis 的分子复杂性。单细胞测序确定了参与 PANoptosis 的多种细胞类型,而批量转录组分析则揭示了与 PANoptosis 相关的关键基因集。机器学习算法构建了一个稳健的预后模型,在不同的队列中表现出一致的预测能力。根据这个 PANoptosis 评分,不同队列的患者可以分为高风险和低风险组,高风险组的预后明显更差。免疫相关性分析揭示了 PANoptosis 与免疫治疗反应之间的联系,具有潜在的治疗意义。突变分析和富集研究提供了与 PANoptosis 相关的突变景观的见解。最后,我们使用细胞实验验证了关键基因 PARVA 的表达和功能,结果表明 PARVA 在黑色素瘤细胞系中高表达,敲低 PARVA 后,细胞侵袭、迁移和集落形成能力显著降低。本研究加深了我们对黑色素瘤中 PANoptosis 的理解,为针对这种侵袭性恶性肿瘤的靶向治疗干预和个性化医学策略提供了全面的框架。

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PANoptosis-related signature in melanoma: Transcriptomic mapping and clinical prognostication.黑色素瘤中的 PANoptosis 相关特征:转录组图谱与临床预后预测。
Environ Toxicol. 2024 May;39(5):2545-2559. doi: 10.1002/tox.24126. Epub 2024 Jan 8.
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引用本文的文献

1
PANoptosis in cancer: bridging molecular mechanisms to therapeutic innovations.癌症中的全程序死亡:将分子机制与治疗创新相联系
Cell Mol Immunol. 2025 Jul 28. doi: 10.1038/s41423-025-01329-z.
2
The role and prognostic value of PANoptosis-related genes in skin cutaneous melanoma.全凋亡相关基因在皮肤黑色素瘤中的作用及预后价值
Front Immunol. 2025 Jun 6;16:1605977. doi: 10.3389/fimmu.2025.1605977. eCollection 2025.
3
Distinct Types of Regulated Cell Death in Melanoma.黑色素瘤中不同类型的程序性细胞死亡
Cells. 2025 Jun 1;14(11):823. doi: 10.3390/cells14110823.
4
Machine learning-based prognostic modeling integrating PANoptosis in head and neck squamous cell carcinoma.基于机器学习的预后模型整合细胞焦亡在头颈部鳞状细胞癌中的应用
Discov Oncol. 2025 Apr 10;16(1):511. doi: 10.1007/s12672-025-02310-y.