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神经桌面:一个可访问、灵活和便携的数据分析环境,用于可重复的神经影像学研究。

Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.

机构信息

The University of Queensland, Queensland Brain Institute, St Lucia, Brisbane, Queensland, Australia.

The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.

出版信息

Nat Methods. 2024 May;21(5):804-808. doi: 10.1038/s41592-023-02145-x. Epub 2024 Jan 8.

Abstract

Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform ( https://www.neurodesk.org/ ) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.

摘要

神经影像学研究需要专门设计的分析软件,而这种软件的安装颇具挑战性,并且在不同的计算环境中可能会产生不同的结果。面向社区的开源 Neurodesk 平台(https://www.neurodesk.org/)利用了一套全面且不断扩展的神经影像学软件容器。Neurodesk 包括一个可通过浏览器访问的虚拟桌面、命令行接口和计算笔记本兼容性,从而可以在个人工作站、高性能计算机和云端实现可访问、灵活、便携和完全可重复的神经影像学分析。

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本文引用的文献

1
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3
Open and reproducible neuroimaging: From study inception to publication.
Neuroimage. 2022 Nov;263:119623. doi: 10.1016/j.neuroimage.2022.119623. Epub 2022 Sep 12.
4
Population-based tract-to-region connectome of the human brain and its hierarchical topology.
Nat Commun. 2022 Aug 22;13(1):4933. doi: 10.1038/s41467-022-32595-4.
5
Neuroscience Cloud Analysis As a Service: An open-source platform for scalable, reproducible data analysis.
Neuron. 2022 Sep 7;110(17):2771-2789.e7. doi: 10.1016/j.neuron.2022.06.018. Epub 2022 Jul 22.
6
Multi-echo quantitative susceptibility mapping: how to combine echoes for accuracy and precision at 3 Tesla.
Magn Reson Med. 2022 Nov;88(5):2101-2116. doi: 10.1002/mrm.29365. Epub 2022 Jun 29.
7
ASLPrep: a platform for processing of arterial spin labeled MRI and quantification of regional brain perfusion.
Nat Methods. 2022 Jun;19(6):683-686. doi: 10.1038/s41592-022-01458-7. Epub 2022 Jun 10.
8
Open-source analysis and visualization of segmented vasculature datasets with VesselVio.
Cell Rep Methods. 2022 Mar 23;2(4):100189. doi: 10.1016/j.crmeth.2022.100189. eCollection 2022 Apr 25.
9
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10
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data.
Neuroinformatics. 2022 Apr;20(2):507-512. doi: 10.1007/s12021-021-09557-0. Epub 2022 Jan 21.

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