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系统多组学分析基因表达及其作为皮肤黑色素瘤和肺腺癌免疫细胞浸润预测生物标志物的作用。

Systematic Multiomic Analysis of Gene Expression and Its Role as a Predicting Biomarker for Immune Cell Infiltration in Skin Cutaneous Melanoma and Lung Adenocarcinoma.

机构信息

Department of Health Industry, Sookmyung Women's University, Seoul 04310, Republic of Korea.

Department of Cosmetic Sciences, Sookmyung Women's University, Seoul 04310, Republic of Korea.

出版信息

Int J Mol Sci. 2023 Dec 26;25(1):359. doi: 10.3390/ijms25010359.

DOI:10.3390/ijms25010359
PMID:38203530
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10778817/
Abstract

The identification of genetic factors that regulate the cancer immune microenvironment is important for understanding the mechanism of tumor progression and establishing an effective treatment strategy. Polycystic kidney and hepatic disease 1-like protein 1 (PKHD1L1) is a large transmembrane protein that is highly expressed in immune cells; however, its association with tumor progression remains unclear. Here, we systematically analyzed the clinical relevance of in the tumor microenvironment in multiple cancer types using various bioinformatic tools. We found that the mRNA expression levels were significantly lower in skin cutaneous melanoma (SKCM) and lung adenocarcinoma (LUAD) than in normal tissues. The decreased expression of was significantly associated with unfavorable overall survival (OS) in SKCM and LUAD. Additionally, expression was positively correlated with the levels of infiltrating B cells, cluster of differentiation (CD)-8 T cells, and natural killer (NK) cells, suggesting that the infiltration of immune cells could be associated with a good prognosis due to increased expression. Gene ontology (GO) analysis also revealed the relationship between -co-altered genes and the activation of lymphocytes, including B and T cells. Collectively, this study shows that expression is positively correlated with a good prognosis via the induction of immune infiltration, suggesting that has potential prognostic value in SKCM and LUAD.

摘要

鉴定调节癌症免疫微环境的遗传因素对于理解肿瘤进展的机制和建立有效的治疗策略非常重要。多囊肾病和肝纤维化 1 样蛋白 1(PKHD1L1)是一种在免疫细胞中高度表达的大型跨膜蛋白,但它与肿瘤进展的关系尚不清楚。在这里,我们使用各种生物信息学工具系统地分析了 在多种癌症类型的肿瘤微环境中的临床相关性。我们发现,与正常组织相比,皮肤黑色素瘤(SKCM)和肺腺癌(LUAD)中的 mRNA 表达水平显著降低。 表达降低与 SKCM 和 LUAD 患者的总生存期(OS)不良显著相关。此外, 表达与浸润 B 细胞、分化簇(CD)-8 T 细胞和自然杀伤(NK)细胞的水平呈正相关,这表明由于 表达增加,免疫细胞的浸润可能与较好的预后相关。基因本体(GO)分析还揭示了 -co 改变基因与淋巴细胞(包括 B 和 T 细胞)激活之间的关系。总之,这项研究表明,通过诱导免疫浸润, 表达与良好的预后呈正相关,表明 在 SKCM 和 LUAD 中具有潜在的预后价值。

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