从水稻种子中分离得到的担子菌酵母菌株RS1的高质量基因组资源。
High-quality genome resource of a basidiomycetous yeast, isolate RS1, isolated from rice seed.
作者信息
Harris William, Choi Gobong, Lee Kiseok Keith, Kim Hyun, Lee Yong-Hwan
机构信息
Department of Agricultural Biotechnology, Seoul National University, Seoul, Republic of Korea.
Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, Republic of Korea.
出版信息
Microbiol Resour Announc. 2024 Feb 15;13(2):e0084723. doi: 10.1128/mra.00847-23. Epub 2024 Jan 16.
Abstract
(anamorph: ) is a basidiomycetous yeast in the Ustilaginaceae family and is a core member of the rice seed microbiome. RS1 was isolated from surface-sterilized rice seeds. This 18.287 Mb draft genome of RS1 is comprised of a 60.8% GC content and 6,817 protein-coding genes.
摘要
（无性型：）是黑粉菌科的担子菌酵母，是水稻种子微生物群的核心成员。RS1从表面消毒的水稻种子中分离得到。RS1的这个18.287 Mb的基因组草图，GC含量为60.8%，有6817个蛋白质编码基因。
相似文献
1
High-quality genome resource of a basidiomycetous yeast, isolate RS1, isolated from rice seed.
Microbiol Resour Announc. 2024 Feb 15;13(2):e0084723. doi: 10.1128/mra.00847-23. Epub 2024 Jan 16.
2
A teleomorph of the ustilaginalean yeast Moesziomyces antarcticus on barnyardgrass in Japan provides bioresources that degrade biodegradable plastics.
Antonie Van Leeuwenhoek. 2019 Apr;112(4):599-614. doi: 10.1007/s10482-018-1190-x. Epub 2018 Oct 27.
3
Detection and diversity of the mannosylerythritol lipid (MEL) gene cluster and lipase A and B genes of Moesziomyces antarcticus isolated from terrestrial sites chronically contaminated with crude oil in Trinidad.
BMC Microbiol. 2022 Feb 4;22(1):43. doi: 10.1186/s12866-021-02419-4.
4
Morphology and Molecular Analysis of Isolated From the Blood Samples of a Chinese Patient.
Front Microbiol. 2019 Feb 15;10:254. doi: 10.3389/fmicb.2019.00254. eCollection 2019.
5
The presence of a significant endophytic fungus in mycobiome of rice seed compartments.
Sci Rep. 2024 Oct 8;14(1):23367. doi: 10.1038/s41598-024-73550-1.
6
Deficiency of biodegradable plastic-degrading enzyme production in a gene-deletion mutant of phyllosphere yeast, Pseudozyma antarctica defective in mannosylerythritol lipid biosynthesis.
AMB Express. 2019 Jul 6;9(1):100. doi: 10.1186/s13568-019-0825-2.
7
Disruption of protease A and B orthologous genes in the basidiomycetous yeast Pseudozyma antarctica GB-4(0) yields a stable extracellular biodegradable plastic-degrading enzyme.
PLoS One. 2021 Mar 17;16(3):e0247462. doi: 10.1371/journal.pone.0247462. eCollection 2021.
8
Asexual and sexual morphs of revisited.
IMA Fungus. 2017 Jun;8(1):117-129. doi: 10.5598/imafungus.2017.08.01.09. Epub 2017 May 15.
9
Metabolomic Evaluation of the Central Metabolic Pathways of Mannosylerythritol Lipid Biosynthesis in Moesziomyces antarcticus T-34.
J Oleo Sci. 2022;71(1):119-125. doi: 10.5650/jos.ess21229.
10
Draft Genome Sequence of the Yeast Pseudozyma antarctica Type Strain JCM10317, a Producer of the Glycolipid Biosurfactants, Mannosylerythritol Lipids.
Genome Announc. 2014 Sep 25;2(5):e00878-14. doi: 10.1128/genomeA.00878-14.
本文引用的文献
1
NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads.
Genome Biol. 2024 Apr 26;25(1):107. doi: 10.1186/s13059-024-03252-4.
2
A fungal member of the phyllosphere antagonizes via a GH25 lysozyme.
Elife. 2021 Jan 11;10:e65306. doi: 10.7554/eLife.65306.
3
Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed.
Microbiome. 2020 Feb 14;8(1):20. doi: 10.1186/s40168-020-00805-0.
4
Deficiency of biodegradable plastic-degrading enzyme production in a gene-deletion mutant of phyllosphere yeast, Pseudozyma antarctica defective in mannosylerythritol lipid biosynthesis.
AMB Express. 2019 Jul 6;9(1):100. doi: 10.1186/s13568-019-0825-2.
5
Morphology and Molecular Analysis of Isolated From the Blood Samples of a Chinese Patient.
Front Microbiol. 2019 Feb 15;10:254. doi: 10.3389/fmicb.2019.00254. eCollection 2019.
6
Pseudozyma aphidis Induces Salicylic-Acid-Independent Resistance to Clavibacter michiganensis in Tomato Plants.
Plant Dis. 2015 May;99(5):621-626. doi: 10.1094/PDIS-04-14-0377-RE. Epub 2015 Apr 30.
7
A teleomorph of the ustilaginalean yeast Moesziomyces antarcticus on barnyardgrass in Japan provides bioresources that degrade biodegradable plastics.
Antonie Van Leeuwenhoek. 2019 Apr;112(4):599-614. doi: 10.1007/s10482-018-1190-x. Epub 2018 Oct 27.
8
Enzymatic degradation of poly-butylene succinate-co-adipate film in rice husks by yeast Pseudozyma antarctica in indoor conditions.
J Biosci Bioeng. 2018 Feb;125(2):199-204. doi: 10.1016/j.jbiosc.2017.08.017. Epub 2017 Sep 23.
9
Foliar application of the leaf-colonizing yeast Pseudozyma churashimaensis elicits systemic defense of pepper against bacterial and viral pathogens.
Sci Rep. 2017 Jan 10;7:39432. doi: 10.1038/srep39432.
10
Pseudozyma aphidis fungaemia with invasive fungal pneumonia in a patient with acute myeloid leukaemia: case report and literature review.
Mycoses. 2016 Jan;59(1):56-61. doi: 10.1111/myc.12435. Epub 2015 Nov 26.
Zotero 插件