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柳美苔蛾(Denis & Schiffermüller,1775年)的基因组序列。

The genome sequence of the Willow Beauty, (Denis & Schiffermüller, 1775).

作者信息

Boyes Douglas, Eagles Marianne, Holland Peter W H

机构信息

UK Centre for Ecology & Hydrology, Wallingford, England, UK.

Independent researcher, Crawley Down, England, UK.

出版信息

Wellcome Open Res. 2023 Jun 2;8:233. doi: 10.12688/wellcomeopenres.19479.1. eCollection 2023.

Abstract

We present a genome assembly from an individual male (the Willow Beauty; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence is 499.7 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 18,486 protein coding genes.

摘要

我们展示了一个来自雄性个体(柳美苔蛾;节肢动物门;昆虫纲;鳞翅目;尺蛾科)的基因组组装结果。基因组序列跨度为499.7兆碱基。大部分组装序列被构建成31条染色体假分子,包括Z性染色体。线粒体基因组也已组装完成,长度为15.7千碱基。在Ensembl上对该组装序列进行的基因注释鉴定出18,486个蛋白质编码基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e785/10799229/826efeebd358/wellcomeopenres-8-21577-g0000.jpg

相似文献

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本文引用的文献

1
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
BMC Bioinformatics. 2023 Jul 18;24(1):288. doi: 10.1186/s12859-023-05385-y.
4
Towards complete and error-free genome assemblies of all vertebrate species.
Nature. 2021 Apr;592(7856):737-746. doi: 10.1038/s41586-021-03451-0. Epub 2021 Apr 28.
5
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database.
NAR Genom Bioinform. 2021 Jan 6;3(1):lqaa108. doi: 10.1093/nargab/lqaa108. eCollection 2021 Mar.
6
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
Nat Methods. 2021 Feb;18(2):170-175. doi: 10.1038/s41592-020-01056-5. Epub 2021 Feb 1.
7
Significantly improving the quality of genome assemblies through curation.
Gigascience. 2021 Jan 9;10(1). doi: 10.1093/gigascience/giaa153.
8
MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics.
Mol Ecol Resour. 2020 Jul;20(4):892-905. doi: 10.1111/1755-0998.13160. Epub 2020 Apr 25.
9
BlobToolKit - Interactive Quality Assessment of Genome Assemblies.
G3 (Bethesda). 2020 Apr 9;10(4):1361-1374. doi: 10.1534/g3.119.400908.
10
Identifying and removing haplotypic duplication in primary genome assemblies.
Bioinformatics. 2020 May 1;36(9):2896-2898. doi: 10.1093/bioinformatics/btaa025.

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