Suppr超能文献

隐匿微蛾(Denis & Schiffermüller,1775年)的基因组序列。

The genome sequence of the Cloaked Minor, (Denis & Schiffermüller, 1775).

作者信息

Boyes Douglas, Broad Gavin R, Holland Peter W H

机构信息

UK Centre for Ecology & Hydrology, Wallingford, England, UK.

Natural History Museum, London, England, UK.

出版信息

Wellcome Open Res. 2023 Jun 16;8:251. doi: 10.12688/wellcomeopenres.19537.1. eCollection 2023.

Abstract

We present a genome assembly from an individual female (the Cloaked Minor; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 889.6 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.3 kilobases in length. Gene annotation of this assembly on Ensembl identified 21,903 protein coding genes.

摘要

我们展示了来自一只雌性个体(隐夜蛾;节肢动物门;昆虫纲;鳞翅目;夜蛾科)的基因组组装结果。基因组序列跨度为889.6兆碱基。大部分组装序列被构建成31条染色体假分子,包括Z性染色体。线粒体基因组也已组装完成,长度为15.3千碱基。在Ensembl上对该组装序列进行的基因注释识别出21,903个蛋白质编码基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cf9/11162523/a1f487a6e8de/wellcomeopenres-8-21641-g0000.jpg

相似文献

1
The genome sequence of the Cloaked Minor, (Denis & Schiffermüller, 1775).
Wellcome Open Res. 2023 Jun 16;8:251. doi: 10.12688/wellcomeopenres.19537.1. eCollection 2023.
2
The genome sequence of the White-point, (Denis & Schiffermüller, 1775).
Wellcome Open Res. 2024 Feb 19;9:62. doi: 10.12688/wellcomeopenres.20682.1. eCollection 2024.
3
The genome sequence of the Bordered Straw, (Denis & Schiffermüller) 1775.
Wellcome Open Res. 2024 Apr 15;9:195. doi: 10.12688/wellcomeopenres.21221.1. eCollection 2024.
4
The genome sequence of the Lunar-spotted Pinion, (Denis & Schiffermüller, 1775).
Wellcome Open Res. 2023 Nov 23;8:545. doi: 10.12688/wellcomeopenres.20148.1. eCollection 2023.
5
The genome sequence of the Small Ranunculus, (Denis & Schiffermüller, 1775).
Wellcome Open Res. 2023 Feb 23;8:101. doi: 10.12688/wellcomeopenres.19067.1. eCollection 2023.
6
The genome sequence of the Purple Clay moth, (Denis & Schiffermüller) 1775.
Wellcome Open Res. 2024 Aug 14;9:471. doi: 10.12688/wellcomeopenres.22868.1. eCollection 2024.
7
The genome sequence of the Streak, (Denis & Schiffermüller, 1775).
Wellcome Open Res. 2024 Sep 3;8:205. doi: 10.12688/wellcomeopenres.19298.2. eCollection 2023.
8
The genome sequence of the Willow Beauty, (Denis & Schiffermüller, 1775).
Wellcome Open Res. 2023 Jun 2;8:233. doi: 10.12688/wellcomeopenres.19479.1. eCollection 2023.
9
The genome sequence of the Ashy Button, (Denis & Schiffermüller, 1775).
Wellcome Open Res. 2023 Jun 12;8:241. doi: 10.12688/wellcomeopenres.19533.1. eCollection 2023.
10
The genome sequence of the Water Veneer, (Denis & Schiffermüller, 1775).
Wellcome Open Res. 2024 Mar 8;9:134. doi: 10.12688/wellcomeopenres.21099.1. eCollection 2024.

本文引用的文献

1
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
BMC Bioinformatics. 2023 Jul 18;24(1):288. doi: 10.1186/s12859-023-05385-y.
3
Towards complete and error-free genome assemblies of all vertebrate species.
Nature. 2021 Apr;592(7856):737-746. doi: 10.1038/s41586-021-03451-0. Epub 2021 Apr 28.
4
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database.
NAR Genom Bioinform. 2021 Jan 6;3(1):lqaa108. doi: 10.1093/nargab/lqaa108. eCollection 2021 Mar.
5
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
Nat Methods. 2021 Feb;18(2):170-175. doi: 10.1038/s41592-020-01056-5. Epub 2021 Feb 1.
6
Significantly improving the quality of genome assemblies through curation.
Gigascience. 2021 Jan 9;10(1). doi: 10.1093/gigascience/giaa153.
7
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.
Genome Biol. 2020 Sep 14;21(1):245. doi: 10.1186/s13059-020-02134-9.
8
MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics.
Mol Ecol Resour. 2020 Jul;20(4):892-905. doi: 10.1111/1755-0998.13160. Epub 2020 Apr 25.
9
BlobToolKit - Interactive Quality Assessment of Genome Assemblies.
G3 (Bethesda). 2020 Apr 9;10(4):1361-1374. doi: 10.1534/g3.119.400908.
10
Identifying and removing haplotypic duplication in primary genome assemblies.
Bioinformatics. 2020 May 1;36(9):2896-2898. doi: 10.1093/bioinformatics/btaa025.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验