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一种新型基于脂质代谢的风险模型与弥漫性大 B 细胞淋巴瘤的免疫抑制机制相关。

A novel lipid metabolism-based risk model associated with immunosuppressive mechanisms in diffuse large B-cell lymphoma.

机构信息

Department of Hematology, Shanghai Ninth People's Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China.

出版信息

Lipids Health Dis. 2024 Jan 22;23(1):20. doi: 10.1186/s12944-024-02017-z.

Abstract

BACKGROUND

The molecular diversity exhibited by diffuse large B-cell lymphoma (DLBCL) is a significant obstacle facing current precision therapies. However, scoring using the International Prognostic Index (IPI) is inadequate when fully predicting the development of DLBCL. Reprogramming lipid metabolism is crucial for DLBCL carcinogenesis and expansion, while a predictive approach derived from lipid metabolism-associated genes (LMAGs) has not yet been recognized for DLBCL.

METHODS

Gene expression profiles of DLBCL were generated using the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases. The LASSO Cox regression was used to construct an effective predictive risk-scoring model for DLBCL patients. The Kaplan-Meier survival assessment was employed to compare a given risk score with the IPI score and its impact on the survival of DLBCL patients. Functional enrichment examination was performed utilizing the KEGG pathway. After identifying hub genes via single-sample GSEA (ssGSEA), immunohistochemical staining and immunofluorescence were performed on lymph node samples from control and DLBCL patients to confirm these identified genes.

RESULTS

Sixteen lipid metabolism- and survival-associated genes were identified to construct a prognostic risk-scoring approach. This model demonstrated robust performance over various datasets and emerged as an autonomous risk factor for predicting the development of DLBCL patients. The risk score could significantly distinguish the development of DLBCL patients from the low-risk and elevated-risk IPI classes. Results from the inhibitory immune-related pathways and lower immune scores suggested an immunosuppressive phenotype within the elevated-risk group. Three hub genes, MECR, ARSK, and RAN, were identified to be negatively correlated with activated CD8 T cells and natural killer T cells in the elevated-risk score class. Ultimately, it was determined that these three genes were expressed by lymphoma cells but not by T cells in clinical samples from DLBCL patients.

CONCLUSION

The risk level model derived from 16 lipid metabolism-associated genes represents a prognostic biomarker for DLBCL that is novel, robust, and may have an immunosuppressive role. It can compensate for the limitations of the IPI score in predicting overall survival and has potential clinical application value.

摘要

背景

弥漫性大 B 细胞淋巴瘤 (DLBCL) 表现出的分子多样性是当前精准治疗面临的重大障碍。然而,国际预后指数 (IPI) 的评分在充分预测 DLBCL 的发展时并不充分。重新编程脂质代谢对 DLBCL 的癌变和扩增至关重要,而基于脂质代谢相关基因 (LMAGs) 的预测方法尚未被认识到用于 DLBCL。

方法

使用基因表达综合数据库 (GEO) 和癌症基因组图谱 (TCGA) 数据库生成 DLBCL 的基因表达谱。使用 LASSO Cox 回归构建 DLBCL 患者有效预测风险评分模型。采用 Kaplan-Meier 生存评估比较给定风险评分与 IPI 评分及其对 DLBCL 患者生存的影响。利用 KEGG 通路进行功能富集检验。通过单样本 GSEA (ssGSEA) 识别出枢纽基因后,对对照和 DLBCL 患者的淋巴结样本进行免疫组织化学染色和免疫荧光染色,以验证这些鉴定出的基因。

结果

确定了 16 个与脂质代谢和生存相关的基因来构建预后风险评分方法。该模型在各种数据集上表现出稳健的性能,并且作为预测 DLBCL 患者发展的独立危险因素出现。风险评分可以显著区分 DLBCL 患者与低风险和升高风险 IPI 类别的发展。抑制性免疫相关途径和较低免疫评分的结果表明升高风险组存在免疫抑制表型。确定了三个枢纽基因 MECR、ARSK 和 RAN,它们与升高风险评分组中激活的 CD8 T 细胞和自然杀伤 T 细胞呈负相关。最终,在 DLBCL 患者的临床样本中发现这三个基因仅由淋巴瘤细胞表达而不由 T 细胞表达。

结论

源自 16 个与脂质代谢相关基因的风险水平模型代表了一种新颖、稳健且可能具有免疫抑制作用的 DLBCL 预后生物标志物。它可以弥补 IPI 评分在预测总生存期方面的局限性,具有潜在的临床应用价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db1e/10801940/fcc9be492cae/12944_2024_2017_Fig1_HTML.jpg

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