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烟草(Nicotiana tabacum L.)中TCP家族成员的鉴定与表达分析

[Identification and expression analysis of TCP family members in tobacco ( L.)].

作者信息

Wang Shize, Li Yun, Han Yucui, Yu Shizhou, Wang Shuang, Liu Yong, Lin Xiaohu

机构信息

Hebei Key Laboratory of Crop Stress Biology, College of Agronomy and Biotechnology, Hebei Normal University of Science and Technology, Qinhuangdao 066004, Hebei, China.

Guizhou Academy of Tobacco Science, Guiyang 550009, Guizhou, China.

出版信息

Sheng Wu Gong Cheng Xue Bao. 2024 Jan 25;40(1):226-238. doi: 10.13345/j.cjb.230345.

Abstract

TCP family as plant specific transcription factor, plays an important role in different aspects of plant development. In order to screen TCP family members in tobacco, the homologous sequences of tobacco and TCP family were identified by genome-wide homologous alignment. The physicochemical properties, phylogenetic relationships and -acting elements were analyzed by bioinformatics. The homologous genes of were screened, and RT-qPCR was used to detect the changes of gene expression upon 20% PEG6000 treatment. The results show that tobacco contains 63 TCP family members. Their amino acid sequence length ranged from 89 aa to 596 aa, and their protein hydropathicity grand average of hydropathicity (GRAVY) ranged from -1.147 to 0.125. The isoelectric point (pI) ranges from 4.42 to 9.94, the number of introns is 0 to 3, and the subcellular location is all located in the nucleus. The results of conserved domain and phylogenetic relationship analysis showed that the tobacco TCP family can be divided into PCF, CIN and CYC/TB1 subfamilies, and each subfamily has a stable sequence. The results of -acting elements in gene promoter region showed that TCP family genes contain low docile acting elements (LTR) and a variety of stress and metabolic regulation related elements (MYB, MYC). Analysis of gene expression patterns showed that / homologous genes (, , , , , , ) accounted for 20% PEG6000 treatment significantly up-regulated/down-regulated expression, and and genes were selected as candidate genes in response to drought. The results of this study analyzed the TCP family in the tobacco genome and provided candidate genes for the study of drought-resistance gene function and variety breeding in tobacco.

摘要

TCP家族作为植物特有的转录因子,在植物发育的不同方面发挥着重要作用。为了筛选烟草中的TCP家族成员,通过全基因组同源比对鉴定了烟草与TCP家族的同源序列。利用生物信息学分析了其理化性质、系统发育关系及顺式作用元件。筛选出了同源基因,并采用RT-qPCR检测20% PEG6000处理后基因表达的变化。结果表明,烟草中含有63个TCP家族成员。它们的氨基酸序列长度为89个氨基酸至596个氨基酸,其蛋白质亲水性平均总亲水性(GRAVY)范围为-1.147至0.125。等电点(pI)范围为4.42至9.94,内含子数量为0至3,亚细胞定位均位于细胞核。保守结构域和系统发育关系分析结果表明,烟草TCP家族可分为PCF、CIN和CYC/TB1亚家族,且每个亚家族都有稳定的序列。基因启动子区域的顺式作用元件结果表明,TCP家族基因含有低温响应元件(LTR)以及多种与胁迫和代谢调控相关的元件(MYB、MYC)。基因表达模式分析表明,/同源基因(、、、、、、)在20% PEG6000处理后表达显著上调/下调,并且和基因被选为响应干旱的候选基因。本研究结果分析了烟草基因组中的TCP家族,为烟草抗旱基因功能研究及品种选育提供了候选基因。

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