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通过单细胞 RNA 测序鉴定 CD90/Thy-1 作为人尿源细胞肌向分化的关键分子特征。

Characterization of CD90/Thy-1 as a crucial molecular signature for myogenic differentiation in human urine-derived cells through single-cell RNA sequencing.

机构信息

Department of Molecular Therapy, National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), 4-1-1 Ogawa-Higashi, Kodaira, Tokyo, 187-8502, Japan.

Department of NCNP Brain Physiology and Pathology, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.

出版信息

Sci Rep. 2024 Jan 28;14(1):2329. doi: 10.1038/s41598-024-52530-5.

DOI:10.1038/s41598-024-52530-5
PMID:38282008
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10822841/
Abstract

Human urine-derived cells (UDCs) are primary cultured cells originating from the upper urinary tract and are known to be multipotent. We previously developed MYOD1-transduced UDCs (MYOD1-UDCs) as a model recapitulating the pathogenesis of Duchenne muscular dystrophy (DMD) caused by a lack of dystrophin. MYOD1-UDCs also allow evaluation of the efficacy of exon skipping with antisense oligonucleotides. However, despite the introduction of MYOD1, some MYOD1-UDCs failed to form myotubes, possibly because of heterogeneity among UDCs. Here, we carried out single-cell RNA-sequencing analyses and revealed that CD90/Thy-1 was highly expressed in a limited subpopulation of UDCs with high myogenic potency. Furthermore, CD90-positive MYOD1-UDCs, but not CD90-negative cells, could form myotubes expressing high levels of myosin heavy chain and dystrophin. Notably, overexpression of CD90 in CD90-negative MYOD1-UDCs did not enhance myogenic differentiation, whereas CD90 suppression in CD90-positive UDCs led to decreased myotube formation and decreased myosin heavy chain expression. CD90 may thus contribute to the fusion of single-nucleated MYOD1-UDCs into myotubes but is not crucial for promoting the expression of late muscle regulatory factors. Finally, we confirmed that CD90-positive MYOD1-UDCs derived from patients with DMD were a valuable tool for obtaining a highly reproducible and stable evaluation of exon skipping using antisense oligonucleotide.

摘要

人尿源性细胞(UDC)是源自上尿路的原代培养细胞,已知具有多能性。我们之前开发了 MYOD1 转导的 UDC(MYOD1-UDC)作为一种模型,可重现由于缺乏肌营养不良蛋白而导致的杜氏肌营养不良症(DMD)的发病机制。MYOD1-UDC 还可以评估反义寡核苷酸的外显子跳跃的疗效。然而,尽管引入了 MYOD1,一些 MYOD1-UDC 未能形成肌管,可能是因为 UDC 之间存在异质性。在这里,我们进行了单细胞 RNA-seq 分析,结果表明 CD90/Thy-1 在具有高成肌能力的 UDC 的有限亚群中高度表达。此外,CD90 阳性的 MYOD1-UDC 可以形成肌管,表达高水平的肌球蛋白重链和肌营养不良蛋白,而 CD90 阴性细胞则不能。值得注意的是,CD90 过表达在 CD90 阴性的 MYOD1-UDC 中并没有增强成肌分化,而 CD90 在 CD90 阳性的 UDC 中的抑制导致肌管形成减少和肌球蛋白重链表达减少。因此,CD90 可能有助于将单核的 MYOD1-UDC 融合成肌管,但对于促进晚期肌肉调节因子的表达并不是至关重要的。最后,我们证实了源自 DMD 患者的 CD90 阳性 MYOD1-UDC 是一种非常有价值的工具,可用于使用反义寡核苷酸获得高度重现性和稳定的外显子跳跃评估。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/7fa12fdd31f3/41598_2024_52530_Fig5a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/a40516c1e2cc/41598_2024_52530_Fig1a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/4de61216170b/41598_2024_52530_Fig2a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/2954d9bdad6f/41598_2024_52530_Fig3a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/74147e88786c/41598_2024_52530_Fig4a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/7fa12fdd31f3/41598_2024_52530_Fig5a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/a40516c1e2cc/41598_2024_52530_Fig1a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/4de61216170b/41598_2024_52530_Fig2a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/2954d9bdad6f/41598_2024_52530_Fig3a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/74147e88786c/41598_2024_52530_Fig4a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/076b/10822841/7fa12fdd31f3/41598_2024_52530_Fig5a_HTML.jpg

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本文引用的文献

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Methods Mol Biol. 2023;2587:153-164. doi: 10.1007/978-1-0716-2772-3_9.
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