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使用MYOD1转导的人尿液来源细胞作为杜氏肌营养不良症外显子跳跃疗法预测平台的方案。

Protocol for using MYOD1-transduced human urine-derived cells as a predictive platform for exon skipping therapy in Duchenne muscular dystrophy.

作者信息

Kunitake Katsuhiko, Ishizuka Takami, Takeshita Eri, Komaki Hirofumi, Aoki Yoshitsugu

机构信息

Department of Molecular Therapy, National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Kodaira, Tokyo 187-8502, Japan.

Translational Medical Center, National Center of Neurology and Psychiatry (NCNP), Kodaira, Tokyo 187-8502, Japan.

出版信息

STAR Protoc. 2025 Jun 20;6(2):103856. doi: 10.1016/j.xpro.2025.103856. Epub 2025 Jun 6.

DOI:10.1016/j.xpro.2025.103856
PMID:40483693
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12173603/
Abstract

Antisense oligonucleotide (ASO)-based exon skipping is a splice-modulating therapy effective for Duchenne muscular dystrophy (DMD) caused by dystrophin deficiency. Here, we present a protocol for evaluating exon skipping efficacy in MYOD1-transduced human urine-derived cells (MYOD1-UDCs) from patients. We describe steps for isolating UDCs, selecting CD90-positive cells, inducing myogenic differentiation, and assessing the restoration of DMD mRNA and proteins after exon skipping. This platform enhances the predictability of ASO screening, promoting early-stage drug discovery and translational research in DMD. For complete details on the use and execution of this protocol, please refer to Komaki et al..

摘要

基于反义寡核苷酸(ASO)的外显子跳跃是一种对由肌营养不良蛋白缺乏引起的杜氏肌营养不良症(DMD)有效的剪接调节疗法。在此,我们展示了一种评估来自患者的MYOD1转导的人尿源细胞(MYOD1-UDCs)中外显子跳跃效率的方案。我们描述了分离UDCs、选择CD90阳性细胞、诱导肌源性分化以及评估外显子跳跃后DMD mRNA和蛋白质恢复情况的步骤。该平台提高了ASO筛选的可预测性,促进了DMD的早期药物发现和转化研究。有关本方案使用和执行的完整详细信息,请参考Komaki等人的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/1ffbeda61013/gr8.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/fffaef642732/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/ceff57624b43/gr5.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/1ffbeda61013/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/eb645e8e57be/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/2a4018c3dfde/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/b172f1ee1fa9/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/65abcdfb8c60/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/fffaef642732/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/ceff57624b43/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/b64a676ea114/gr6.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a094/12173603/1ffbeda61013/gr8.jpg

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本文引用的文献

1
Duchenne muscular dystrophy: recent insights in brain related comorbidities.杜氏肌营养不良症:脑相关合并症的最新见解
Nat Commun. 2025 Feb 3;16(1):1298. doi: 10.1038/s41467-025-56644-w.
2
Phase 1/2 trial of brogidirsen: Dual-targeting antisense oligonucleotides for exon 44 skipping in Duchenne muscular dystrophy.布罗吉迪森1/2期试验:用于杜氏肌营养不良症外显子44跳跃的双靶点反义寡核苷酸
Cell Rep Med. 2025 Jan 21;6(1):101901. doi: 10.1016/j.xcrm.2024.101901. Epub 2025 Jan 9.
3
Characterization of CD90/Thy-1 as a crucial molecular signature for myogenic differentiation in human urine-derived cells through single-cell RNA sequencing.
通过单细胞 RNA 测序鉴定 CD90/Thy-1 作为人尿源细胞肌向分化的关键分子特征。
Sci Rep. 2024 Jan 28;14(1):2329. doi: 10.1038/s41598-024-52530-5.
4
eSkip-Finder: a machine learning-based web application and database to identify the optimal sequences of antisense oligonucleotides for exon skipping.eSkip-Finder:一种基于机器学习的网络应用程序和数据库,用于识别外显子跳跃的最佳反义寡核苷酸序列。
Nucleic Acids Res. 2021 Jul 2;49(W1):W193-W198. doi: 10.1093/nar/gkab442.
5
Improved Isolation and Culture of Urine-Derived Stem Cells (USCs) and Enhanced Production of Immune Cells from the USC-Derived Induced Pluripotent Stem Cells.尿液来源干细胞(USCs)的改良分离与培养以及从USC诱导多能干细胞中增强免疫细胞的产生
J Clin Med. 2020 Mar 18;9(3):827. doi: 10.3390/jcm9030827.
6
Modelling Duchenne muscular dystrophy in MYOD1-converted urine-derived cells treated with 3-deazaneplanocin A hydrochloride.用盐酸 3-去氮杂胞苷处理 MYOD1 转化的尿液来源细胞建立杜氏肌营养不良症模型。
Sci Rep. 2019 Mar 7;9(1):3807. doi: 10.1038/s41598-019-40421-z.
7
Analysis of extracellular mRNA in human urine reveals splice variant biomarkers of muscular dystrophies.分析人尿液中的细胞外信使 RNA 揭示了肌肉萎缩症的剪接变异体生物标志物。
Nat Commun. 2018 Sep 25;9(1):3906. doi: 10.1038/s41467-018-06206-0.
8
Systemic administration of the antisense oligonucleotide NS-065/NCNP-01 for skipping of exon 53 in patients with Duchenne muscular dystrophy.给予反义寡核苷酸 NS-065/NCNP-01 全身性治疗以跳过杜氏肌营养不良症患者的外显子 53。
Sci Transl Med. 2018 Apr 18;10(437). doi: 10.1126/scitranslmed.aan0713.
9
The TREAT-NMD DMD Global Database: analysis of more than 7,000 Duchenne muscular dystrophy mutations.TREAT-NMD杜氏肌营养不良全球数据库:对7000多个杜氏肌营养不良突变的分析。
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Lancet. 2011 Aug 13;378(9791):595-605. doi: 10.1016/S0140-6736(11)60756-3. Epub 2011 Jul 23.