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低-高-低旋转脉冲驱动串联可溶膜阀在基于光盘实验室的植物病原体检测的固相萃取和环介导等温扩增中的应用

Low-High-Low Rotationally Pulse-Actuated Serial Dissolvable Film Valves Applied to Solid Phase Extraction and LAMP Isothermal Amplification for Plant Pathogen Detection on a Lab-on-a-Disc.

作者信息

Julius Lourdes An, Saeed Muhammad Mubashar, Kuijpers Tim, Sandu Sergei, Henihan Grace, Dreo Tanja, Schoen Cor D, Mishra Rohit, Dunne Nicholas J, Carthy Eadaoin, Ducrée Jens, Kinahan David J

机构信息

Fraunhofer Project Centre at Dublin City University, Dublin City University, Glasnevin D09 V209, Dublin, Ireland.

School of Physical Sciences, Dublin City University, Dublin D09 V209, Ireland.

出版信息

ACS Omega. 2024 Jan 9;9(3):3262-3275. doi: 10.1021/acsomega.3c05117. eCollection 2024 Jan 23.

DOI:10.1021/acsomega.3c05117
PMID:38284094
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10809376/
Abstract

The ability of the centrifugal Lab-on-a-Disc (LoaD) platform to closely mimic the "on bench" liquid handling steps (laboratory unit operations (LUOs)) such as metering, mixing, and aliquoting supports on-disc automation of bioassay without the need for extensive biological optimization. Thus, well-established bioassays, normally conducted manually using pipettes or using liquid handling robots, can be relatively easily automated in self-contained microfluidic chips suitable for use in point-of-care or point-of-use settings. The LoaD's ease of automation is largely dependent on valves that can control liquid movement on the rotating disc. The optimum valving strategy for a true low-cost and portable device is rotationally actuated valves, which are actuated by changes in the disc spin-speed. However, due to tolerances in disc manufacturing and variations in reagent properties, most of these valving technologies have inherent variation in their actuation spin-speed. Most valves are actuated through stepped increases in disc spin-speed until the motor reaches its maximum speed (rarely more than 6000 rpm). These manufacturing tolerances combined with this "analogue" mechanism of valve actuation limits the number of LUOs that can be placed on-disc. In this work, we present a novel valving mechanism called low-high-low serial dissolvable film (DF) valves. In these valves, a DF membrane is placed in a dead-end pneumatic chamber. Below an actuation spin-speed, the trapped air prevents liquid wetting and dissolving the membrane. Above this spin-speed, the liquid will enter and wet the DF and open the valve. However, as DFs take ∼40 s to dissolve, the membrane can be wetted, and the disc spin-speed reduced before the film opens. Thus, by placing valves in a series, we can govern on which "digital pulse" in spin-speeding a reagent is released; a reservoir with one serial valve will open on the first pulse, a reservoir with two serial valves on the second, and so on. This "digital" flow control mechanism allows the automation of complex assays with high reliability. In this work, we first describe the operation of the valves, outline the theoretical basis for their operation, and support this analysis with an experiment. Next, we demonstrate how these valves can be used to automate the solid-phase extraction of DNA on on-disc LAMP amplification for applications in plant pathogen detection. The disc was successfully used to extract and detect, from a sample lysed off-disc, DNA indicating the presence of thermally inactivated , a bacterial pathogen on tomato leaf samples.

摘要

离心式芯片实验室(LoaD)平台能够紧密模拟“实验台上”的液体处理步骤(实验室单元操作(LUOs)),如计量、混合和分装,这支持了生物测定的芯片自动化,而无需进行大量生物学优化。因此,通常使用移液器手动进行或使用液体处理机器人进行的成熟生物测定,可以在适用于即时检测或即时使用场景的独立微流控芯片中相对容易地实现自动化。LoaD的自动化简便性在很大程度上取决于能够控制旋转盘上液体流动的阀门。对于真正低成本且便携的设备而言,最佳的阀门策略是旋转驱动阀门,其通过盘旋转速度的变化来驱动。然而,由于盘制造中的公差以及试剂特性的变化,这些阀门技术大多在其驱动旋转速度方面存在固有变化。大多数阀门是通过盘旋转速度的逐步增加来驱动的,直到电机达到其最大速度(很少超过6000转/分钟)。这些制造公差与这种“模拟”阀门驱动机制相结合,限制了可放置在盘上的LUO数量。在这项工作中,我们提出了一种名为低-高-低串联可溶解膜(DF)阀门的新型阀门机制。在这些阀门中,DF膜放置在死端气动腔室中。在驱动旋转速度以下,捕获的空气可防止液体润湿和溶解膜。在该旋转速度以上,液体会进入并润湿DF,从而打开阀门。然而,由于DF需要约40秒才能溶解,在膜打开之前,膜可能会被润湿,并且盘旋转速度会降低。因此,通过将阀门串联放置,我们可以控制在旋转加速的哪个“数字脉冲”时释放试剂;带有一个串联阀门的储液器将在第一个脉冲时打开,带有两个串联阀门的储液器将在第二个脉冲时打开,依此类推。这种“数字”流量控制机制能够以高可靠性实现复杂测定的自动化。在这项工作中,我们首先描述阀门的操作,概述其操作的理论基础,并通过实验来支持这一分析。接下来,我们展示这些阀门如何用于在盘上LAMP扩增中自动化DNA的固相萃取,以应用于植物病原体检测。该盘成功地用于从盘外裂解的样品中提取和检测DNA,表明番茄叶片样品上存在热灭活的细菌病原体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/a1e50b40f62d/ao3c05117_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/bc121cba805b/ao3c05117_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/271217c279b6/ao3c05117_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/ef6d68d79c10/ao3c05117_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/3952d34f1fc9/ao3c05117_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/e3e3de1dffd6/ao3c05117_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/b93f3bbd44cf/ao3c05117_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/a1e50b40f62d/ao3c05117_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/bc121cba805b/ao3c05117_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/271217c279b6/ao3c05117_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/ef6d68d79c10/ao3c05117_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/3952d34f1fc9/ao3c05117_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/e3e3de1dffd6/ao3c05117_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/b93f3bbd44cf/ao3c05117_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/120f/10809376/a1e50b40f62d/ao3c05117_0007.jpg

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