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细菌外膜的 ATP 非依赖性组装机制:BAM 复合物的结构和功能为下一代治疗方法奠定了基础。

ATP-independent assembly machinery of bacterial outer membranes: BAM complex structure and function set the stage for next-generation therapeutics.

机构信息

Molecular Biophysics Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal, India.

出版信息

Protein Sci. 2024 Feb;33(2):e4896. doi: 10.1002/pro.4896.

DOI:10.1002/pro.4896
PMID:38284489
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10804688/
Abstract

Diderm bacteria employ β-barrel outer membrane proteins (OMPs) as their first line of communication with their environment. These OMPs are assembled efficiently in the asymmetric outer membrane by the β-Barrel Assembly Machinery (BAM). The multi-subunit BAM complex comprises the transmembrane OMP BamA as its functional subunit, with associated lipoproteins (e.g., BamB/C/D/E/F, RmpM) varying across phyla and performing different regulatory roles. The ability of BAM complex to recognize and fold OM β-barrels of diverse sizes, and reproducibly execute their membrane insertion, is independent of electrochemical energy. Recent atomic structures, which captured BAM-substrate complexes, show the assembly function of BamA can be tailored, with different substrate types exhibiting different folding mechanisms. Here, we highlight common and unique features of its interactome. We discuss how this conserved protein complex has evolved the ability to effectively achieve the directed assembly of diverse OMPs of wide-ranging sizes (8-36 β-stranded monomers). Additionally, we discuss how darobactin-the first natural membrane protein inhibitor of Gram-negative bacteria identified in over five decades-selectively targets and specifically inhibits BamA. We conclude by deliberating how a detailed deduction of BAM complex-associated regulation of OMP biogenesis and OM remodeling will open avenues for the identification and development of effective next-generation therapeutics against Gram-negative pathogens.

摘要

Diderm 细菌将β-桶状外膜蛋白(OMP)作为与环境进行交流的第一通道。这些 OMP 通过β-桶状组装机制(BAM)在外膜的不对称结构中高效组装。多亚基 BAM 复合物包含跨门结构域的功能亚基跨膜 OMP BamA,以及相关的脂蛋白(例如,BamB/C/D/E/F、RmpM),这些蛋白在不同的门中变化,并发挥不同的调节作用。BAM 复合物识别和折叠不同大小的 OM β-桶,并重复进行膜插入的能力独立于电化学能量。最近捕获 BAM-底物复合物的原子结构表明,BamA 的组装功能可以进行定制,不同的底物类型表现出不同的折叠机制。在这里,我们强调了其互作组的常见和独特特征。我们讨论了这个保守的蛋白质复合物是如何进化出有效实现各种大小(8-36 个β-链单体)的广泛 OMP 定向组装的能力。此外,我们还讨论了 darobactin——五十多年来首次发现的革兰氏阴性细菌天然膜蛋白抑制剂——如何选择性地靶向并特异性抑制 BamA。最后,我们讨论了详细推断 BAM 复合物对 OMP 生物发生和 OM 重塑的调节将如何为识别和开发针对革兰氏阴性病原体的有效下一代治疗方法开辟途径。

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本文引用的文献

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Dual recognition of multiple signals in bacterial outer membrane proteins enhances assembly and maintains membrane integrity.细菌外膜蛋白中多种信号的双重识别增强了组装并维持了膜的完整性。
Elife. 2024 Jan 16;12:RP90274. doi: 10.7554/eLife.90274.
2
High-throughput screening of BAM inhibitors in native membrane environment.在天然膜环境中对 BAM 抑制剂进行高通量筛选。
Nat Commun. 2023 Sep 13;14(1):5648. doi: 10.1038/s41467-023-41445-w.
3
Drug Binding to BamA Targets Its Lateral Gate.药物与 BamA 靶标结合会打开其横向门。
J Phys Chem B. 2023 Aug 31;127(34):7509-7517. doi: 10.1021/acs.jpcb.3c04501. Epub 2023 Aug 16.
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Antibiotics and hexagonal order in the bacterial outer membrane.抗生素与细菌外膜中的六边形排列
Nat Commun. 2023 Aug 9;14(1):4772. doi: 10.1038/s41467-023-40275-0.
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Impact on S. aureus and E. coli Membranes of Treatment with Chlorhexidine and Alcohol Solutions: Insights from Molecular Simulations and Nuclear Magnetic Resonance.氯己定和酒精溶液处理对金黄色葡萄球菌和大肠杆菌膜的影响:分子模拟和核磁共振的见解。
J Mol Biol. 2023 Jun 1;435(11):167953. doi: 10.1016/j.jmb.2023.167953. Epub 2023 Jun 16.
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Categorization of Escherichia coli outer membrane proteins by dependence on accessory proteins of the β-barrel assembly machinery complex.根据对β桶状结构组装机器复合物辅助蛋白的依赖性对大肠杆菌外膜蛋白进行分类。
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