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热射病相关神经损伤候选基因的分子研究及初步验证。

Molecular Investigation and Preliminary Validation of Candidate Genes Associated with Neurological Damage in Heat Stroke.

机构信息

Department of Emergency Center, Second Affiliated Hospital of Nantong University, No. 6 North, Child Lane Road, Nantong, China.

Department of Neurology, Second Affiliated Hospital of Nantong University, No. 6, North Child Lane Road, Nantong, China.

出版信息

Mol Neurobiol. 2024 Sep;61(9):6312-6327. doi: 10.1007/s12035-024-03968-1. Epub 2024 Jan 31.

DOI:10.1007/s12035-024-03968-1
PMID:38296899
Abstract

Heat stroke (HS) is a severe medical condition characterized by a systemic inflammatory response that may precipitate multi-organ dysfunction, with a particular predilection for inducing profound central nervous system impairments. We aim to employ bioinformatics techniques for the retrieval and analysis of genes associated with heat stroke-induced neurological damage. We performed a comprehensive analysis of the GSE64778 dataset from the Sequence Read Archive, resulting in the identification of 1178 significantly differentially expressed genes (DEGs). We retrieved 2914 genes associated with heat stroke from the GeneCards database and 2377 genes associated with heat stroke from the Comparative Toxicogenomics Database (CTD). The intersection of the top 300 DEGs in the GSE64778 dataset intersected with the search results of GeneCards and CTD, yielding 25 final candidates for DEGs associated with heat stroke. Gene Ontology functional annotation results indicated that the target genes were mainly involved in apoptosis, stress response, and negative regulation of cellular processes and function in processes such as protein dimerization and protein binding. The Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis revealed a predominant enrichment of candidate target genes within the PI3K-AKT signaling pathway. Subsequent protein-protein interaction network analysis highlighted HSP90aa1 as a central gene, indicating its pivotal role by possessing the highest number of edges among the genes enriched in the PI3K-AKT signaling pathway. Quantitative reverse transcription-polymerase chain reaction analysis performed on blood samples from patients validated the expression of Hsp90aa1 in individuals exhibiting early neurological damage in HS, consistent with the findings from the mRNA bioinformatics analysis. Additionally, the bioinformatics analysis of the upstream microRNAs (miRNAs) regulating HSP90aa1 and the target miRNAs associated with candidate long non-coding RNAs (lncRNAs) identified three lncRNAs, eight miRNAs, and one mRNA in the regulatory network. The DIANA Tools database and algorithms were employed for pathway enrichment and correlation analysis, revealing a significant association between LOC102547734 and MIR-206-3p, with the latter being identified as a target binding site Moreover, the analysis unveiled a correlation between MIR-206-3p and HSP90aa1, implicating the latter as a potential target binding site within the regulatory network.

摘要

热射病(HS)是一种严重的医学病症,其特征是全身性炎症反应,可能导致多器官功能障碍,尤其容易导致中枢神经系统严重损伤。我们旨在运用生物信息学技术检索和分析与热射病引起的神经损伤相关的基因。我们对来自序列读取档案的 GSE64778 数据集进行了全面分析,确定了 1178 个显著差异表达的基因(DEGs)。我们从基因卡片数据库中检索到与热射病相关的 2914 个基因,从比较毒理学基因组数据库(CTD)中检索到与热射病相关的 2377 个基因。在 GSE64778 数据集的前 300 个 DEGs 中进行的交集与基因卡片和 CTD 的搜索结果相交,产生了 25 个与热射病相关的 DEGs 的最终候选基因。基因本体论功能注释结果表明,这些靶基因主要参与凋亡、应激反应以及细胞过程和功能的负调控,在蛋白质二聚化和蛋白质结合等过程中发挥作用。京都基因与基因组百科全书通路富集分析显示,候选靶基因在 PI3K-AKT 信号通路中明显富集。随后的蛋白质-蛋白质相互作用网络分析突出了 HSP90aa1 作为中心基因的作用,因为它在 PI3K-AKT 信号通路中富集的基因中具有最高数量的边缘。对来自热射病患者的血液样本进行的定量逆转录-聚合酶链反应分析验证了 Hsp90aa1 在 HS 早期神经损伤个体中的表达,这与 mRNA 生物信息学分析的结果一致。此外,对调节 HSP90aa1 的上游 microRNAs(miRNAs)和与候选长链非编码 RNA(lncRNA)相关的靶 miRNAs 的生物信息学分析,确定了调控网络中的三个 lncRNA、八个 miRNAs 和一个 mRNA。DIANA 工具数据库和算法用于通路富集和相关性分析,发现 LOC102547734 与 MIR-206-3p 之间存在显著关联,后者被确定为靶结合位点。此外,分析揭示了 MIR-206-3p 与 HSP90aa1 之间的相关性,表明后者是调控网络中的一个潜在靶结合位点。

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本文引用的文献

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