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一个用于儿科癌症数据探索的开源平台:来自“数据造福大众”组织的报告

An open-source platform for pediatric cancer data exploration: a report from Data for the Common Good.

作者信息

Wyatt Kirk D, Graglia Luca, Furner Brian, Kang Bobae, Fitzsimons Michael, Grossman Robert L, Volchenboum Samuel L

机构信息

Department of Pediatric Hematology/Oncology, Roger Maris Cancer Center, Sanford Health, Fargo, ND 58102, United States.

Data for the Common Good, University of Chicago, Chicago, IL 60637, United States.

出版信息

JAMIA Open. 2024 Jan 31;7(1):ooae004. doi: 10.1093/jamiaopen/ooae004. eCollection 2024 Apr.

DOI:10.1093/jamiaopen/ooae004
PMID:38304249
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10833446/
Abstract

OBJECTIVE

The Pediatric Cancer Data Commons (PCDC)-a project of Data for the Common Good-houses clinical pediatric oncology data and utilizes the open-source Gen3 platform. To meet the needs of end users, the PCDC development team expanded the out-of-box functionality and developed additional custom features that should be useful to any group developing similar data commons.

MATERIALS AND METHODS

Modifications of the PCDC data portal software were implemented to facilitate desired functionality.

RESULTS

Newly developed functionality includes updates to authorization methods, expansion of filtering capabilities, and addition of data analysis functions.

DISCUSSION

We describe the process by which custom functionalities were developed. Features are open source and available to be implemented and adapted to suit needs of data portals that utilize the Gen3 platform.

CONCLUSION

Data portals are indispensable tools for facilitating data sharing. Open-source infrastructure facilitates a modular and collaborative approach for meeting needs of end users and stakeholders.

摘要

目的

儿科癌症数据共享库(PCDC)——数据造福公益项目旗下的一个项目,存储临床儿科肿瘤学数据,并使用开源的Gen3平台。为满足终端用户的需求,PCDC开发团队扩展了开箱即用功能,并开发了其他自定义功能,这些功能对任何开发类似数据共享库的团队都应有所帮助。

材料与方法

对PCDC数据门户软件进行修改,以实现所需功能。

结果

新开发的功能包括授权方法更新、过滤功能扩展以及数据分析功能添加。

讨论

我们描述了自定义功能的开发过程。这些功能是开源的,可用于实施并进行调整,以满足使用Gen3平台的数据门户的需求。

结论

数据门户是促进数据共享的不可或缺的工具。开源基础设施为满足终端用户和利益相关者的需求提供了一种模块化和协作式方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b407/10833446/18ef7396ebf4/ooae004f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b407/10833446/2e9360793f71/ooae004f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b407/10833446/813243085e51/ooae004f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b407/10833446/18ef7396ebf4/ooae004f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b407/10833446/2e9360793f71/ooae004f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b407/10833446/813243085e51/ooae004f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b407/10833446/18ef7396ebf4/ooae004f3.jpg

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A Case for Data Commons: Toward Data Science as a Service.数据共享的实例:迈向数据科学即服务
Comput Sci Eng. 2016 Sep-Oct;18(5):10-20. doi: 10.1109/MCSE.2016.92. Epub 2016 Aug 24.