Chinedu Shalom N, Bella-Omunagbe Mercy, Okafor Esther, Afolabi Rufus, Adebiyi Ezekiel
Department of Biochemistry, Covenant University, Ota, Nigeria.
Covenant University Public Health & Well-being Research Cluster (CUPHWERC), Covenant University, Ota, Nigeria.
Bioinform Biol Insights. 2024 Feb 7;18:11779322241230214. doi: 10.1177/11779322241230214. eCollection 2024.
6-Pyruvoyl tetrahydropterin synthase (6-PTPS) is a lyase involved in the synthesis of tetrahydrobiopterin. In species where dihydroneopterin aldolase (DHNA) is absent, it acts in the folate biosynthetic pathway necessary for the growth and survival of the parasite. The 6-pyruvoyl tetrahydropterin synthase of (PTPS) has been identified as a potential antimalarial drug target. This study identified potential inhibitors of PTPS using molecular docking techniques. Molecular docking and virtual screening of 62 compounds including the control to the deposited Protein Data Bank (PDB) structure was carried out using AutoDock Vina in PyRx. Five of the compounds, -dimethyl-'-[4-oxo-6-(2,2,5-trimethyl-1,3-dioxolan-4-yl)-3H-pteridin-2-yl]methanimidamide (140296439), 2-amino-6-[(1R)-3-cyclohexyl-1-hydroxypropyl]-3H-pteridin-4-one (140296495), 2-(2,3-dihydroxypropyl)-8,9-dihydro-6H-pyrimido[2,1-b]pteridine-7,11-dione (144380406), 2-(dimethylamino)-6-[(2,2-dimethyl-1,3-dioxolan-4-yl)-hydroxymethyl]-3H-pteridin-4-one (135573878), and [1-acetyloxy-1-(2-methyl-4-oxo-3H-pteridin-6-yl)propan-2-yl] acetate (136075207), showed better binding affinity than the control ligand, biopterin (135449517), and were selected and screened. Three conformers of 140296439 with the binding energy of -7.2, -7.1, and -7.0 kcal/mol along with 140296495 were better than the control at -5.7 kcal/mol. In silico absorption, distribution, metabolism, excretion, and toxicity (ADMET) studies predicted good pharmacokinetic properties of all the compounds while reporting a high risk of irritant toxicity in 140296439 and 144380406. The study highlights the five compounds, 140296439, 140296495, 144380406, 135573878 and 136075207, as potential inhibitors of PfPTPS and possible compounds for antimalarial drug development.
6-丙酮酰四氢蝶呤合酶(6-PTPS)是一种参与四氢生物蝶呤合成的裂合酶。在缺乏二氢新蝶呤醛缩酶(DHNA)的物种中,它在寄生虫生长和存活所必需的叶酸生物合成途径中发挥作用。恶性疟原虫的6-丙酮酰四氢蝶呤合酶(PTPS)已被确定为潜在的抗疟药物靶点。本研究使用分子对接技术鉴定了PTPS的潜在抑制剂。利用PyRx中的AutoDock Vina对包括对照物在内的62种化合物进行了分子对接和虚拟筛选,并与存入蛋白质数据库(PDB)的结构进行比对。其中5种化合物,即N,N'-二甲基-N''-[4-氧代-6-(2,2,5-三甲基-1,3-二氧戊环-4-基)-3H-蝶啶-2-基]甲脒(140296439)、2-氨基-6-[(1R)-3-环己基-1-羟基丙基]-3H-蝶啶-4-酮(140296495)、2-(2,3-二羟基丙基)-8,9-二氢-6H-嘧啶并[2,1-b]蝶啶-7,11-二酮(144380406)、2-(二甲基氨基)-6-[(2,2-二甲基-1,3-二氧戊环-4-基)羟甲基]-3H-蝶啶-4-酮(135573878)和[1-乙酰氧基-1-(2-甲基-4-氧代-3H-蝶啶-6-基)丙-2-基]乙酸酯(136075207),显示出比对照配体生物蝶呤(135449517)更好的结合亲和力,并被选中进行筛选。140296439的三个构象体,结合能分别为-7.2、-7.1和-7.0 kcal/mol,以及140296495,优于对照物-5.7 kcal/mol的结合能。计算机模拟的吸收、分布、代谢、排泄和毒性(ADMET)研究预测了所有化合物良好的药代动力学性质,同时报告了140296439和144380406存在刺激性毒性的高风险。该研究突出了140296439、140296495、144380406、135573878和136075207这5种化合物作为恶性疟原虫PTPS的潜在抑制剂以及抗疟药物开发的可能化合物。