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短 DNA 凸起中 8-氧鸟嘌呤的异常修复。

Aberrant Repair of 8-Oxoguanine in Short DNA Bulges.

机构信息

Institute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, Novosibirsk, Russia.

Novosibirsk State University, Novosibirsk, Russia.

出版信息

Dokl Biochem Biophys. 2023 Dec;513(Suppl 1):S82-S86. doi: 10.1134/S1607672923600355. Epub 2024 Feb 9.

DOI:10.1134/S1607672923600355
PMID:38337103
Abstract

The presence of DNA damage can increase the likelihood of DNA replication errors and promote mutations. In particular, pauses of DNA polymerase at the site of damage can lead to polymerase slippage and the formation of 1-2-nucleotide bulges. Repair of such structures using an undamaged DNA template leads to small deletions. One of the most abundant oxidative DNA lesions, 8-oxoguanine (oxoG), was shown to induce small deletions, but the mechanism of this phenomenon is currently unknown. We studied the aberrant repair of oxoG located in one- and two-nucleotide bulges by the Escherichia coli and human base excision repair systems. Our results indicate that the repair in such substrates can serve as a mechanism for fixing small deletions in bacteria but not in humans.

摘要

DNA 损伤的存在会增加 DNA 复制错误的可能性,并促进突变的发生。特别是,在损伤部位 DNA 聚合酶的暂停会导致聚合酶滑动,并形成 1-2 个核苷酸的凸起。使用未受损的 DNA 模板修复这些结构会导致小的缺失。8-氧鸟嘌呤(oxoG)是最丰富的氧化 DNA 损伤之一,被证明会诱导小的缺失,但目前尚不清楚这种现象的机制。我们研究了大肠杆菌和人类碱基切除修复系统对位于一个和两个核苷酸凸起中的 oxoG 的异常修复。我们的结果表明,这种底物的修复可以作为细菌中小缺失固定的机制,但在人类中则不是。

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本文引用的文献

1
Recognition of a Clickable Abasic Site Analog by DNA Polymerases and DNA Repair Enzymes.DNA 聚合酶和 DNA 修复酶对可点击无碱基位点类似物的识别。
Int J Mol Sci. 2022 Nov 1;23(21):13353. doi: 10.3390/ijms232113353.
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8-Oxo-7,8-dihydroguanine, friend and foe: Epigenetic-like regulator versus initiator of mutagenesis.8-氧代-7,8-二氢鸟嘌呤,亦敌亦友:类表观遗传调控因子与诱变起始物
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Unlike catalyzing error-free bypass of 8-oxodGuo, DNA polymerase λ is responsible for a significant part of Fapy·dG-induced G → T mutations in human cells.
与催化8-氧代鸟嘌呤(8-oxodGuo)的无错旁路不同,DNA聚合酶λ在人类细胞中导致Fapy·dG诱导的G→T突变中起重要作用。
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Kinetics of substrate recognition and cleavage by human 8-oxoguanine-DNA glycosylase.人8-氧代鸟嘌呤-DNA糖基化酶对底物的识别及切割动力学
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DNA lesion recognition by the bacterial repair enzyme MutM.细菌修复酶MutM对DNA损伤的识别
J Biol Chem. 2003 Dec 19;278(51):51543-8. doi: 10.1074/jbc.M307768200. Epub 2003 Oct 1.
9
Distinguishing "looped-out" and "stacked-in" DNA bulge conformation using fluorescent 2-aminopurine replacing a purine base.使用荧光2-氨基嘌呤取代嘌呤碱基来区分“环出”和“堆积入”的DNA凸起构象。
J Biomol Struct Dyn. 2002 Apr;19(5):929-34. doi: 10.1080/07391102.2002.10506795.
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Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA.与DNA共价结合的甲酰胺嘧啶-DNA糖基化酶的结构。
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