CIBIO-UP, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, InBIO, Laboratório Associado, Vairão, Portugal.
BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal.
Front Immunol. 2024 Jan 31;15:1329098. doi: 10.3389/fimmu.2024.1329098. eCollection 2024.
s (guanylate binding proteins), an evolutionary ancient protein family, play a key role in the host's innate immune response against bacterial, parasitic and viral infections. In Humans, seven genes have been described (). Despite the interest these proteins have received over the last years, evolutionary studies have only been performed in primates, and rodents. These have shown a pattern of gene gain and loss in each family, indicative of the birth-and-death evolution process.
In this study, we analysed the evolution of this gene cluster in several bat species, belonging to the Yangochiroptera and Yinpterochiroptera sub-orders. Detailed analysis shows a conserved synteny and a gene expansion and loss history. Phylogenetic analysis showed that bats have s , and -. has been lost in several bat families, being present only in Hipposideidae and Pteropodidae. s, and are present mostly as single-copy genes in all families but have suffered duplication events, particularly in and Most interestingly, we demonstrate that duplicated in a Chiroptera ancestor species originating two genes, which we named and , with different subsequent evolutionary histories. 6a underwent several duplication events in all families while 6b is present as a single copy gene and has been lost in Pteropodidae, Miniopteridae and , a Phyllostomidae. With 14 and 15 genes, and stand out as having far more copies than all other studied bat species. Antagonistically, Pteropodidae have the lowest number of genes in bats.
Bats are important reservoirs of viruses, many of which have become zoonotic diseases in the last decades. Further functional studies on bats s will help elucidate their function, evolutionary history, and the role of bats as virus reservoirs.
s(鸟苷酸结合蛋白)是一个进化上古老的蛋白质家族,在宿主对细菌、寄生虫和病毒感染的固有免疫反应中发挥关键作用。在人类中,已经描述了 7 个基因()。尽管这些蛋白质在过去几年引起了人们的兴趣,但进化研究仅在灵长类动物和啮齿动物中进行过。这些研究表明,每个家族都存在基因获得和丢失的模式,表明了诞生和死亡的进化过程。
在这项研究中,我们分析了几种蝙蝠物种中这个基因簇的进化,这些蝙蝠属于 Yangochiroptera 和 Yinpterochiroptera 亚目。详细分析显示了保守的同线性和基因扩张和丢失的历史。系统发育分析表明,蝙蝠有 s、s 和 s。在几个蝙蝠科中已经丢失了 s,仅存在于 Hipposideidae 和 Pteropodidae 科中。s、s 和 s 主要以单拷贝基因存在于所有科中,但经历了复制事件,特别是在 s 和 s 中。最有趣的是,我们证明 s 在起源于两个基因的一个 Chiroptera 祖先物种中发生了复制,我们将这两个基因命名为 s 和 s,它们具有不同的后续进化历史。6a 在所有家族中都经历了多次复制事件,而 6b 则作为单拷贝基因存在,并且在 Pteropodidae、Miniopteridae 和 Phyllostomidae 中丢失。s 和 s 拥有 14 和 15 个基因,明显比所有其他研究的蝙蝠物种拥有更多的拷贝。相反,Pteropodidae 是蝙蝠中拥有 s 基因数量最少的科。
蝙蝠是病毒的重要宿主,其中许多病毒在过去几十年中已成为人畜共患病。进一步研究蝙蝠 s 的功能将有助于阐明其功能、进化历史以及蝙蝠作为病毒宿主的作用。