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揭示 CALB 对 PBDF 降解性能增强的分子机理。

Molecular insight into the enhanced performance of CALB toward PBDF degradation.

机构信息

School of Environmental Science and Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China.

School of Environmental Science and Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China; State Environmental Protection Key Laboratory of Environmental Health Impact Assessment of Emerging Contaminants, Shanghai 200240, China.

出版信息

Int J Biol Macromol. 2024 Mar;262(Pt 2):130181. doi: 10.1016/j.ijbiomac.2024.130181. Epub 2024 Feb 13.

Abstract

Poly(butylene diglycolate-co-furandicarboxylate) (PBDF) is a newly developed biodegradable copolyester. Candida antarctica lipase B (CALB) has been identified as an effective catalyst for PBDF degradation. The mechanism is elucidated using a combination of molecular dynamics simulations and quantum chemistry approaches. The findings unveil a four-step catalytic reaction pathway. Furthermore, bond analysis, charge and interaction analysis are conducted to gain a more comprehensive understanding of the PBDF degradation process. Additionally, through the introduction of single-point mutations to crucial residues in CALB's active sites, two mutants, T138I and D134I, are discovered to exhibit improved catalytic efficiency. These significant findings contribute to the advancement of our comprehension concerning the molecular mechanism of underlying copolyesters degradation, while also presenting a novel approach for expediting the degradation rate by the CALB enzyme modification.

摘要

聚(对苯二甲酸丁二醇酯-共-呋喃二甲酸酯)(PBDF)是一种新开发的可生物降解共聚酯。已鉴定出南极假丝酵母脂肪酶 B(CALB)是 PBDF 降解的有效催化剂。该机制是通过分子动力学模拟和量子化学方法的结合来阐明的。研究结果揭示了一个四步催化反应途径。此外,还进行了键分析、电荷和相互作用分析,以更全面地了解 PBDF 降解过程。此外,通过在 CALB 活性位点的关键残基上引入单点突变,发现两个突变体 T138I 和 D134I 表现出提高的催化效率。这些重要发现有助于我们深入理解基础共聚酯降解的分子机制,同时也为通过 CALB 酶修饰来提高降解速率提供了一种新方法。

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