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E2Fs 的表达模式可识别人类胃癌中的肿瘤微环境特征。

Expression patterns of E2Fs identify tumor microenvironment features in human gastric cancer.

机构信息

Department of Talent Highland, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.

Department of General Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.

出版信息

PeerJ. 2024 Feb 13;12:e16911. doi: 10.7717/peerj.16911. eCollection 2024.


DOI:10.7717/peerj.16911
PMID:38371373
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10870925/
Abstract

OBJECTIVE: E2F transcription factors are associated with tumor development, but their underlying mechanisms in gastric cancer (GC) remain unclear. This study explored whether E2Fs determine the prognosis or immune and therapy responses of GC patients. METHODS: E2F regulation patterns from The Cancer Genome Atlas (TCGA) were systematically investigated and E2F patterns were correlated with the characteristics of cellular infiltration in the tumor microenvironment (TME). A principal component analysis was used to construct an E2F scoring model based on prognosis-related differential genes to quantify the E2F regulation of a single tumor. This scoring model was then tested in patient cohorts to predict effects of immunotherapy. RESULTS: Based on the expression profiles of E2F transcription factors in GC, two different regulatory patterns of E2F were identified. TME and survival differences emerged between the two clusters. Lower survival rates in the Cluster2 group were attributed to limited immune function due to stromal activation. The E2F scoring model was then constructed based on the E2F-related prognostic genes. Evidence supported the E2F score as an independent and effective prognostic factor and predictor of immunotherapy response. A gene-set analysis correlated E2F score with the characteristics of immune cell infiltration within the TME. The immunotherapy cohort database showed that patients with a higher E2F score demonstrated better survival and immune responses. CONCLUSIONS: This study found that differences in GC prognosis might be related to the E2F patterns in the TME. The E2F scoring system developed in this study has practical value as a predictor of survival and treatment response in GC patients.

摘要

目的:E2F 转录因子与肿瘤的发生发展有关,但它们在胃癌(GC)中的作用机制尚不清楚。本研究旨在探讨 E2Fs 是否决定 GC 患者的预后或免疫和治疗反应。

方法:系统地研究了来自癌症基因组图谱(TCGA)的 E2F 调控模式,并将 E2F 模式与肿瘤微环境(TME)中细胞浸润的特征相关联。使用主成分分析基于与预后相关的差异基因构建 E2F 评分模型,以量化单个肿瘤的 E2F 调控。然后在患者队列中测试该评分模型以预测免疫治疗的效果。

结果:基于 GC 中 E2F 转录因子的表达谱,鉴定出两种不同的 E2F 调控模式。两个聚类之间存在 TME 和生存差异。Cluster2 组的生存率较低归因于基质激活导致的免疫功能受限。然后基于与 E2F 相关的预后基因构建了 E2F 评分模型。证据支持 E2F 评分作为独立且有效的预后因素和免疫治疗反应预测因子。基因集分析将 E2F 评分与 TME 中免疫细胞浸润的特征相关联。免疫治疗队列数据库显示,E2F 评分较高的患者具有更好的生存和免疫反应。

结论:本研究发现 GC 预后的差异可能与 TME 中的 E2F 模式有关。本研究开发的 E2F 评分系统具有作为 GC 患者生存和治疗反应预测因子的实用价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/25cd20c8df59/peerj-12-16911-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/eea6c0e3f07c/peerj-12-16911-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/45f9094094df/peerj-12-16911-g002.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/313a4a53d93f/peerj-12-16911-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/b7e754fa5764/peerj-12-16911-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/05764a209a08/peerj-12-16911-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/d9e1aac8ad5c/peerj-12-16911-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/25cd20c8df59/peerj-12-16911-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/eea6c0e3f07c/peerj-12-16911-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/45f9094094df/peerj-12-16911-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/a16ade8cb933/peerj-12-16911-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/313a4a53d93f/peerj-12-16911-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/b7e754fa5764/peerj-12-16911-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/05764a209a08/peerj-12-16911-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/d9e1aac8ad5c/peerj-12-16911-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd1c/10870925/25cd20c8df59/peerj-12-16911-g008.jpg

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引用本文的文献

[1]
Insights into the E2F target genes in breast cancer: associations of pathway genes with prognosis and immune cell filtration based on in silico and ex vivo analyses.

Cancer Cell Int. 2025-6-6

[2]
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[3]
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[4]
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[5]
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Diagnostics (Basel). 2024-6-13

本文引用的文献

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Biochim Biophys Acta Rev Cancer. 2022-9

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