School of Life Science and Technology, Changchun University of Science and Technology, Changchun 130022, PR China.
School of Life Science and Technology, Changchun University of Science and Technology, Changchun 130022, PR China; Chinese Academy of Science, Shenzhen Institutes of Advanced and Technology, Shenzhen 518000, PR China.
Spectrochim Acta A Mol Biomol Spectrosc. 2024 May 5;312:124054. doi: 10.1016/j.saa.2024.124054. Epub 2024 Feb 19.
Breast cancer is a significant cause of death among women worldwide. It is crucial to quickly and accurately diagnose breast cancer in order to reduce mortality rates. While traditional diagnostic techniques for medical imaging and pathology samples have been commonly used in breast cancer screening, they still have certain limitations. Surface-enhanced Raman spectroscopy (SERS) is a fast, highly sensitive and user-friendly method that is often combined with deep learning techniques like convolutional neural networks. This combination helps identify unique molecular spectral features, also known as "fingerprint", in biological samples such as serum. Ultimately, this approach is able to accurately screen for cancer. The Gramian angular field (GAF) algorithm can convert one-dimensional (1D) time series into two-dimensional (2D) images. These images can be used for data visualization, pattern recognition and machine learning tasks. In this study, 640 serum SERS from breast cancer patients and healthy volunteers were converted into 2D spectral images by Gramian angular field (GAF) technique. These images were then used to train and test a two-dimensional convolutional neural network-GAF (2D-CNN-GAF) model for breast cancer classification. We compared the performance of the 2D-CNN-GAF model with other methods, including one-dimensional convolutional neural network (1D-CNN), support vector machine (SVM), K-nearest neighbor (KNN) and principal component analysis-linear discriminant analysis (PCA-LDA), using various evaluation metrics such as accuracy, precision, sensitivity, F1-score, receiver operating characteristic (ROC) curve and area under curve (AUC) value. The results showed that the 2D-CNN model outperformed the traditional models, achieving an AUC value of 0.9884, an accuracy of 98.13%, sensitivity of 98.65% and specificity of 97.67% for breast cancer classification. In this study, we used conventional nano-silver sol as the SERS-enhanced substrate and a portable laser Raman spectrometer to obtain the serum SERS data. The 2D-CNN-GAF model demonstrated accurate and automatic classification of breast cancer patients and healthy volunteers. The method does not require augmentation and preprocessing of spectral data, simplifying the processing steps of spectral data. This method has great potential for accurate breast cancer screening and also provides a useful reference in more types of cancer classification and automatic screening.
乳腺癌是全球女性死亡的主要原因之一。快速准确地诊断乳腺癌对于降低死亡率至关重要。虽然传统的医学成像和病理样本的诊断技术在乳腺癌筛查中已经得到广泛应用,但它们仍然存在一定的局限性。表面增强拉曼光谱(SERS)是一种快速、高灵敏度和用户友好的方法,通常与卷积神经网络等深度学习技术结合使用。这种结合有助于识别生物样本(如血清)中独特的分子光谱特征,也称为“指纹”。最终,这种方法能够准确地进行癌症筛查。Gramian 角场(GAF)算法可以将一维(1D)时间序列转换为二维(2D)图像。这些图像可用于数据可视化、模式识别和机器学习任务。在这项研究中,通过 Gramian 角场(GAF)技术将 640 个乳腺癌患者和健康志愿者的血清 SERS 转换为二维光谱图像。然后,这些图像被用于训练和测试二维卷积神经网络-GAF(2D-CNN-GAF)模型,以进行乳腺癌分类。我们使用各种评估指标,如准确性、精度、灵敏度、F1 分数、接收者操作特征(ROC)曲线和曲线下面积(AUC)值,将 2D-CNN-GAF 模型的性能与其他方法(包括一维卷积神经网络(1D-CNN)、支持向量机(SVM)、K-最近邻(KNN)和主成分分析-线性判别分析(PCA-LDA))进行了比较。结果表明,2D-CNN 模型优于传统模型,在乳腺癌分类中实现了 AUC 值为 0.9884、准确性为 98.13%、灵敏度为 98.65%和特异性为 97.67%。在这项研究中,我们使用常规纳米银溶胶作为 SERS 增强基底和便携式激光拉曼光谱仪来获取血清 SERS 数据。2D-CNN-GAF 模型实现了对乳腺癌患者和健康志愿者的准确自动分类。该方法不需要对光谱数据进行扩充和预处理,简化了光谱数据的处理步骤。该方法在乳腺癌的准确筛查方面具有很大的潜力,同时也为更广泛类型的癌症分类和自动筛查提供了有用的参考。
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