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通过计算机辅助药物设计方法,以天然产物的结构类似物靶向[具体生物]中的嘌呤补救途径。 (你提供的原文中“in by”表述有误,推测可能是“in [具体生物] by”,这里按推测后的内容翻译,你可根据实际情况修改。)

Targeting with Structural Analogs of Natural Products the Purine Salvage Pathway in by Computer-Aided Drug-Design Approaches.

作者信息

Barazorda-Ccahuana Haruna Luz, Cárcamo-Rodriguez Eymi Gladys, Centeno-Lopez Angela Emperatriz, Galdino Alexsandro Sobreira, Machado-de-Ávila Ricardo Andrez, Giunchetti Rodolfo Cordeiro, Coelho Eduardo Antonio Ferraz, Chávez-Fumagalli Miguel Angel

机构信息

Computational Biology and Chemistry Research Group, Vicerrectorado de Investigación, Universidad Católica de Santa María, Arequipa 04000, Peru.

Facultad de Ciencias Farmacéuticas, Bioquímicas y Biotecnológicas, Universidad Católica de Santa María, Arequipa 04000, Peru.

出版信息

Trop Med Infect Dis. 2024 Feb 3;9(2):41. doi: 10.3390/tropicalmed9020041.


DOI:10.3390/tropicalmed9020041
PMID:38393130
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10891554/
Abstract

Visceral Leishmaniasis (VL) has a high death rate, with 500,000 new cases and 50,000 deaths occurring annually. Despite the development of novel strategies and technologies, there is no adequate treatment for the disease. Therefore, the purpose of this study is to find structural analogs of natural products as potential novel drugs to treat VL. We selected structural analogs from natural products that have shown antileishmanial activities, and that may impede the purine salvage pathway using computer-aided drug-design (CADD) approaches. For these, we started with the vastly studied target in the pathway, the adenine phosphoribosyl transferase (APRT) protein, which alone is non-essential for the survival of the parasite. Keeping this in mind, we search for a substance that can bind to multiple targets throughout the pathway. Computational techniques were used to study the purine salvage pathway from , and molecular dynamic simulations were used to gather information on the interactions between ligands and proteins. Because of its low homology to human proteins and its essential role in the purine salvage pathway proteins network interaction, the findings further highlight the significance of adenylosuccinate lyase protein (ADL) as a therapeutic target. An analog of the alkaloid Skimmianine, N,N-diethyl-4-methoxy-1-benzofuran-6-carboxamide, demonstrated a good binding affinity to APRT and ADL targets, no expected toxicity, and potential for oral route administration. This study indicates that the compound may have antileishmanial activity, which was granted and experiments to settle this finding in the future.

摘要

内脏利什曼病(VL)死亡率很高,每年有50万新发病例和5万例死亡。尽管开发了新的策略和技术,但该疾病仍缺乏有效的治疗方法。因此,本研究的目的是寻找天然产物的结构类似物作为治疗VL的潜在新药。我们从具有抗利什曼原虫活性且可能通过计算机辅助药物设计(CADD)方法阻碍嘌呤补救途径的天然产物中选择结构类似物。为此,我们从该途径中经过大量研究的靶点腺嘌呤磷酸核糖转移酶(APRT)蛋白入手,该蛋白本身对寄生虫的存活并非必需。考虑到这一点,我们寻找一种能够与整个途径中的多个靶点结合的物质。使用计算技术研究嘌呤补救途径,并用分子动力学模拟收集配体与蛋白质之间相互作用的信息。由于其与人类蛋白质的同源性较低,且在嘌呤补救途径蛋白质网络相互作用中具有重要作用,研究结果进一步凸显了腺苷酸琥珀酸裂解酶蛋白(ADL)作为治疗靶点的重要性。生物碱Skimmianine的类似物N,N -二乙基-4-甲氧基-1-苯并呋喃-6-甲酰胺对APRT和ADL靶点表现出良好的结合亲和力,无预期毒性,且有口服给药的潜力。本研究表明该化合物可能具有抗利什曼原虫活性,未来将通过 和 实验来确定这一发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/3b96d81a1fe7/tropicalmed-09-00041-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/3bc0ed56b78d/tropicalmed-09-00041-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/2e259cddb716/tropicalmed-09-00041-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/e48c17d21052/tropicalmed-09-00041-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/42b51577eb7b/tropicalmed-09-00041-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/3b96d81a1fe7/tropicalmed-09-00041-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/3bc0ed56b78d/tropicalmed-09-00041-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/2e259cddb716/tropicalmed-09-00041-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/e48c17d21052/tropicalmed-09-00041-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/42b51577eb7b/tropicalmed-09-00041-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a304/10891554/3b96d81a1fe7/tropicalmed-09-00041-g005.jpg

相似文献

[1]
Targeting with Structural Analogs of Natural Products the Purine Salvage Pathway in by Computer-Aided Drug-Design Approaches.

Trop Med Infect Dis. 2024-2-3

[2]
Targeting Mannosyl-oligosaccharide glucosidase with natural products: potential pH-dependent inhibition explored through computer-aided drug design.

Front Pharmacol. 2024-5-30

[3]
Computer-aided drug design approaches applied to screen natural product's structural analogs targeting arginase in Leishmania spp.

F1000Res. 2023

[4]
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J Recept Signal Transduct Res. 2017-2

[5]
Computational multi-target approach to target essential enzymes of Leishmania donovani using comparative molecular dynamic simulations and MMPBSA analysis.

Phytochem Anal. 2023-10

[6]
Metabolic Pathway Analysis Identifying Target Against Leishmaniasis - A Kinetic Modeling Approach.

Front Genet. 2020-3-6

[7]
Antiparasitic chemotherapy: tinkering with the purine salvage pathway.

Adv Exp Med Biol. 2008

[8]
Antileishmanial Activity of Cinnamic Acid Derivatives against .

Molecules. 2023-3-21

[9]
In silico Leishmania proteome mining applied to identify drug target potential to be used to treat against visceral and tegumentary leishmaniasis.

J Mol Graph Model. 2018-11-29

[10]
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引用本文的文献

[1]
approaches supporting drug repurposing for Leishmaniasis: a scoping review.

EXCLI J. 2024-9-3

[2]
Targeting Mannosyl-oligosaccharide glucosidase with natural products: potential pH-dependent inhibition explored through computer-aided drug design.

Front Pharmacol. 2024-5-30

本文引用的文献

[1]
Dual-target drugs against Leishmania donovani for potential novel therapeutics.

Sci Rep. 2023-10-26

[2]
Computer-aided drug design approaches applied to screen natural product's structural analogs targeting arginase in Leishmania spp.

F1000Res. 2023

[3]
Targeting the nucleotide metabolism of Trypanosoma brucei and other trypanosomatids.

FEMS Microbiol Rev. 2023-5-19

[4]
Computer-aided drug design.

BMC Chem. 2023-3-24

[5]
Computational multi-target approach to target essential enzymes of Leishmania donovani using comparative molecular dynamic simulations and MMPBSA analysis.

Phytochem Anal. 2023-10

[6]
Skimmianine: Natural Occurrence, Biosynthesis, Synthesis, Pharmacology and Pharmacokinetics.

Med Chem. 2023

[7]
Visceral Leishmaniasis: Epidemiology, Diagnosis, and Treatment Regimens in Different Geographical Areas with a Focus on Pediatrics.

Microorganisms. 2022-9-21

[8]
Development of Novel Anti-Leishmanials: The Case for Structure-Based Approaches.

Pathogens. 2022-8-22

[9]
Exploring actinomycetes natural products to identify potential multi-target inhibitors against .

3 Biotech. 2022-9

[10]
Antileishmanial Drug Discovery and Development: Time to Reset the Model?

Microorganisms. 2021-12-2

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