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首次对苏拉明处理后的布氏锥虫进行全面的非靶向代谢组学研究:从多因素数据分析建模到功能分析的综合数据分析工作流程。

First comprehensive untargeted metabolomics study of suramin-treated Trypanosoma brucei: an integrated data analysis workflow from multifactor data modelling to functional analysis.

机构信息

Pharmacognosy Research Group, Louvain Drug Research Institute (LDRI), UCLouvain, Avenue E. Mounier, B1 72.03, 1200, Brussels, Belgium.

Laboratory of Pharmacognosy, Center of Interdisciplinary Research on Medicines (CIRM), University of Liège, Liège, Belgium.

出版信息

Metabolomics. 2024 Feb 23;20(2):25. doi: 10.1007/s11306-024-02094-2.


DOI:10.1007/s11306-024-02094-2
PMID:38393408
Abstract

INTRODUCTION: Human African trypanosomiasis, commonly known as sleeping sickness, is a vector-borne parasitic disease prevalent in sub-Saharan Africa and transmitted by the tsetse fly. Suramin, a medication with a long history of clinical use, has demonstrated varied modes of action against Trypanosoma brucei. This study employs a comprehensive workflow to investigate the metabolic effects of suramin on T. brucei, utilizing a multimodal metabolomics approach. OBJECTIVES: The primary aim of this study is to comprehensively analyze the metabolic impact of suramin on T. brucei using a combined liquid chromatography-mass spectrometry (LC-MS) and nuclear magnetic resonance spectroscopy (NMR) approach. Statistical analyses, encompassing multivariate analysis and pathway enrichment analysis, are applied to elucidate significant variations and metabolic changes resulting from suramin treatment. METHODS: A detailed methodology involving the integration of high-resolution data from LC-MS and NMR techniques is presented. The study conducts a thorough analysis of metabolite profiles in both suramin-treated and control T. brucei brucei samples. Statistical techniques, including ANOVA-simultaneous component analysis (ASCA), principal component analysis (PCA), ANOVA 2 analysis, and bootstrap tests, are employed to discern the effects of suramin treatment on the metabolomics outcomes. RESULTS: Our investigation reveals substantial differences in metabolic profiles between the control and suramin-treated groups. ASCA and PCA analysis confirm distinct separation between these groups in both MS-negative and NMR analyses. Furthermore, ANOVA 2 analysis and bootstrap tests confirmed the significance of treatment, time, and interaction effects on the metabolomics outcomes. Functional analysis of the data from LC-MS highlighted the impact of treatment on amino-acid, and amino-sugar and nucleotide-sugar metabolism, while time effects were observed on carbon intermediary metabolism (notably glycolysis and di- and tricarboxylic acids of the succinate production pathway and tricarboxylic acid (TCA) cycle). CONCLUSION: Through the integration of LC-MS and NMR techniques coupled with advanced statistical analyses, this study identifies distinctive metabolic signatures and pathways associated with suramin treatment in T. brucei. These findings contribute to a deeper understanding of the pharmacological impact of suramin and have the potential to inform the development of more efficacious therapeutic strategies against African trypanosomiasis.

摘要

简介:人类非洲锥虫病,俗称昏睡病,是一种由采采蝇传播的寄生虫病,在撒哈拉以南非洲流行。苏拉明是一种具有长期临床应用历史的药物,对布氏锥虫具有多种作用模式。本研究采用综合工作流程,利用多模态代谢组学方法研究苏拉明对布氏锥虫的代谢影响。 目的:本研究的主要目的是采用液相色谱-质谱联用(LC-MS)和核磁共振波谱(NMR)相结合的方法,全面分析苏拉明对布氏锥虫的代谢影响。应用多元分析和途径富集分析等统计分析方法,阐明苏拉明处理后显著变化和代谢变化。 方法:提出了一种综合的高分辨率 LC-MS 和 NMR 技术数据的详细方法。本研究对苏拉明处理和对照布氏锥虫的样品进行了全面的代谢产物谱分析。采用方差分析-同时成分分析(ASCA)、主成分分析(PCA)、方差分析 2 分析和自举检验等统计技术,研究苏拉明处理对代谢组学结果的影响。 结果:我们的研究表明,在对照和苏拉明处理组之间的代谢谱存在显著差异。ASCA 和 PCA 分析证实,在 MS 阴性和 NMR 分析中,这两组之间有明显的分离。此外,方差分析 2 分析和自举检验证实,处理、时间和相互作用对代谢组学结果有显著影响。LC-MS 数据的功能分析突出了处理对氨基酸、氨基糖和核苷酸糖代谢的影响,而时间的影响则表现在碳中间代谢物(特别是糖酵解和琥珀酸生成途径的二羧酸和三羧酸以及三羧酸(TCA)循环)上。 结论:通过整合 LC-MS 和 NMR 技术,并结合先进的统计分析,本研究确定了苏拉明处理与布氏锥虫相关的独特代谢特征和途径。这些发现有助于深入了解苏拉明的药理作用,并有可能为开发更有效的抗非洲锥虫病治疗策略提供信息。

相似文献

[1]
First comprehensive untargeted metabolomics study of suramin-treated Trypanosoma brucei: an integrated data analysis workflow from multifactor data modelling to functional analysis.

Metabolomics. 2024-2-23

[2]
Trypanosoma brucei: Metabolomics for analysis of cellular metabolism and drug discovery.

Metabolomics. 2022-3-19

[3]
Comparison of Three Widely Employed Extraction Methods for Metabolomic Analysis of Trypanosoma brucei.

Curr Protoc. 2024-5

[4]
Suramin action in African trypanosomes involves a RuvB-like DNA helicase.

Int J Parasitol Drugs Drug Resist. 2023-12

[5]
100 Years of Suramin.

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[6]
100 years since the publication of the suramin formula.

Parasitol Res. 2023-12-7

[7]
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Int J Parasitol Drugs Drug Resist. 2021-4

[8]
Beyond immune escape: a variant surface glycoprotein causes suramin resistance in Trypanosoma brucei.

Mol Microbiol. 2018-1

[9]
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[10]
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本文引用的文献

[1]
100 years since the publication of the suramin formula.

Parasitol Res. 2023-12-7

[2]
How much (ATP) does it cost to build a trypanosome? A theoretical study on the quantity of ATP needed to maintain and duplicate a bloodstream-form Trypanosoma brucei cell.

PLoS Pathog. 2023-7

[3]
Aminoacyl tRNA Synthetases: Implications of Structural Biology in Drug Development against Trypanosomatid Parasites.

ACS Omega. 2023-4-10

[4]
Metabolic insights into phosphofructokinase inhibition in bloodstream-form trypanosomes.

Front Cell Infect Microbiol. 2023

[5]
Aminoacyl-tRNA synthetase (AARS) as an attractive drug target in neglected tropical trypanosomatid diseases-Leishmaniasis, Human African Trypanosomiasis and Chagas disease.

Mol Biochem Parasitol. 2022-9

[6]
Trypanosoma brucei: Metabolomics for analysis of cellular metabolism and drug discovery.

Metabolomics. 2022-3-19

[7]
Biogenesis and metabolic homeostasis of trypanosomatid glycosomes: New insights and new questions.

J Eukaryot Microbiol. 2022-11

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MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights.

Nucleic Acids Res. 2021-7-2

[9]
Carbohydrate metabolism in trypanosomatids: New insights revealing novel complexity, diversity and species-unique features.

Exp Parasitol. 2021-5

[10]
MetaboAnalystR 3.0: Toward an Optimized Workflow for Global Metabolomics.

Metabolites. 2020-5-7

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