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塞尔维亚屠宰猪中戊型肝炎病毒RNA基因组的流行率、遗传多样性及定量分析

Prevalence, Genetic Diversity, and Quantification of the RNA Genome of the Hepatitis E Virus in Slaughtered Pigs in Serbia.

作者信息

Milojević Lazar, Velebit Branko, Janković Vesna, Mitrović Radmila, Betić Nikola, Simunović Sara, Dimitrijević Mirjana

机构信息

Institute of Meat Hygiene and Technology, Kaćanskog 13, 11040 Belgrade, Serbia.

Faculty of Veterinary Medicine, University of Belgrade, Bulevar Oslobođenja 18, 11000 Belgrade, Serbia.

出版信息

Animals (Basel). 2024 Feb 10;14(4):586. doi: 10.3390/ani14040586.

DOI:10.3390/ani14040586
PMID:38396554
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10886375/
Abstract

The goal of this study conducted in Serbia was to detect HEV in pig liver samples from slaughterhouses, retail outlets, and environmental swabs over the course of a year. All positive HEV samples were measured and expressed as HEV gene copy numbers per gram of sample, and a representative number of samples were sequenced using the Sanger approach. A total of 45 HEV-positive samples were re-amplified using nested RT-PCR employing CODEHOP primers targeting ORF2 (493 nucleotides). The average prevalence of the HEV genotype 3 in all pig liver samples from the slaughterhouses was 29%, while HEV prevalence was 44% in liver samples from animals younger than 3 months. HEV RNA was found in thirteen out of sixty (22%) environmental swab samples that were taken from different surfaces along the slaughter line. Our findings confirmed seasonal patterns in HEV prevalence, with two picks (summer and winter periods) during the one-year examination. Among HEV-positive samples, the average viral particles for all positive liver samples was 4.41 ± 1.69 log genome copies per gram. Phylogenetic analysis revealed the majority of HEV strains (43/45) from Serbia were grouped in the HEV-3a subtype, while two strains were classified into the HEV-3c subtype, and one strain could not be classified into any of the HEV-3 subtypes.

摘要

在塞尔维亚开展的这项研究的目的是,在一年的时间里检测来自屠宰场、零售点的猪肝样本以及环境拭子中的戊型肝炎病毒(HEV)。对所有HEV阳性样本进行测量,并以每克样本中的HEV基因拷贝数表示,使用桑格测序法对代表性数量的样本进行测序。使用靶向ORF2(493个核苷酸)的CODEHOP引物,通过巢式逆转录聚合酶链反应(RT-PCR)对总共45个HEV阳性样本进行再次扩增。屠宰场所有猪肝样本中戊型肝炎病毒3型的平均流行率为29%,而3个月龄以下动物的肝脏样本中HEV流行率为44%。在从屠宰线不同表面采集的60个环境拭子样本中,有13个(22%)检测到HEV RNA。我们的研究结果证实了HEV流行的季节性模式,在为期一年的检测中有两个高峰(夏季和冬季)。在HEV阳性样本中,所有阳性肝脏样本的平均病毒颗粒数为每克4.41±1.69 log基因组拷贝。系统发育分析显示,来自塞尔维亚的大多数HEV毒株(43/45)归为HEV-3a亚型,有两个毒株归为HEV-3c亚型,还有一个毒株无法归入任何HEV-3亚型。

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本文引用的文献

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Identification and genetic diversity of hepatitis E virus in domestic swine from Slovakia.斯洛伐克国内猪群中戊型肝炎病毒的鉴定和遗传多样性。
BMC Vet Res. 2021 Jun 30;17(1):232. doi: 10.1186/s12917-021-02936-4.
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MEGA11: Molecular Evolutionary Genetics Analysis Version 11.MEGA11:分子进化遗传学分析版本 11。
Mol Biol Evol. 2021 Jun 25;38(7):3022-3027. doi: 10.1093/molbev/msab120.
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Hepatitis E virus genome detection in commercial pork livers and pork meat products in Germany.德国市售猪肝和猪肉制品中戊型肝炎病毒基因组的检测。
J Viral Hepat. 2021 Jan;28(1):196-204. doi: 10.1111/jvh.13396. Epub 2020 Sep 20.
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Detection and quantification of hepatitis E virus RNA in ready to eat raw pork sausages in the Netherlands.检测和定量荷兰即食生猪肉香肠中的戊型肝炎病毒 RNA。
Int J Food Microbiol. 2020 Nov 16;333:108791. doi: 10.1016/j.ijfoodmicro.2020.108791. Epub 2020 Jul 15.
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Public health risks associated with hepatitis E virus (HEV) as a food-borne pathogen.与戊型肝炎病毒(HEV)作为食源性病原体相关的公共卫生风险。
EFSA J. 2017 Jul 11;15(7):e04886. doi: 10.2903/j.efsa.2017.4886. eCollection 2017 Jul.
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Update: proposed reference sequences for subtypes of hepatitis E virus (species ).更新:戊型肝炎病毒(种)各亚型的建议参考序列。
J Gen Virol. 2020 Jul;101(7):692-698. doi: 10.1099/jgv.0.001435.
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Detection of Hepatitis E Virus in Livers and Muscle Tissues of Wild Boars in Italy.检测意大利野猪肝脏和肌肉组织中的戊型肝炎病毒。
Food Environ Virol. 2020 Mar;12(1):1-8. doi: 10.1007/s12560-019-09405-0. Epub 2019 Sep 10.
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HEVnet: a One Health, collaborative, interdisciplinary network and sequence data repository for enhanced hepatitis E virus molecular typing, characterisation and epidemiological investigations.HEVnet:一个关注人类健康的合作性跨学科网络,也是一个序列数据存储库,旨在加强戊型肝炎病毒的分子分型、特征描述和流行病学研究。
Euro Surveill. 2019 Mar;24(10). doi: 10.2807/1560-7917.ES.2019.24.10.1800407.
10
Correction to: Prevalence and phylogenetic analysis of hepatitis E virus in pigs, wild boars, roe deer, red deer and moose in Lithuania.对《立陶宛猪、野猪、狍、马鹿和驼鹿中戊型肝炎病毒的流行情况及系统发育分析》的更正
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