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在. 中对 Myb 结构域蛋白家族进行全基因组分类

Genome-Wide Classification of Myb Domain-Containing Protein Families in .

机构信息

Posgrado en Ciencias Genómicas, Universidad Autónoma de la Ciudad de México, Mexico City C.P. 03100, Mexico.

Licenciatura Ciencias Genómicas, Universidad Autónoma de la Ciudad de México, Mexico City C.P. 03100, Mexico.

出版信息

Genes (Basel). 2024 Feb 2;15(2):201. doi: 10.3390/genes15020201.

DOI:10.3390/genes15020201
PMID:38397191
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10887745/
Abstract

, the causative agent of amebiasis, is the third leading cause of death among parasitic diseases globally. Its life cycle includes encystation, which has been mostly studied in , responsible for reptilian amebiasis. However, the molecular mechanisms underlying this process are not fully understood. Therefore, we focused on the identification and characterization of Myb proteins, which regulate the expression of encystation-related genes in various protozoan parasites. Through bioinformatic analysis, we identified 48 genes in encoding MYB-domain-containing proteins. These were classified into single-repeat 1R (20), 2R-MYB proteins (27), and one 4R-MYB protein. The in-silico analysis suggests that these proteins are multifunctional, participating in transcriptional regulation, chromatin remodeling, telomere maintenance, and . Transcriptomic data analysis revealed expression signatures of genes, suggesting a potential orchestration in the regulation of early and late encystation-excystation genes. Furthermore, we identified probable target genes associated with reproduction, the meiotic cell cycle, ubiquitin-dependent protein catabolism, and endosomal transport. In conclusion, our findings suggest that Myb proteins regulate stage-specific proteins and a wide array of cellular processes. This study provides a foundation for further exploration of the molecular mechanisms governing encystation and unveils potential targets for therapeutic intervention in amebiasis.

摘要

溶组织内阿米巴(Entamoeba histolytica)是引起阿米巴病的病原体,是全球寄生虫病死亡的第三大原因。其生命周期包括囊化,这在引起爬行动物阿米巴病的 中得到了广泛研究。然而,这一过程的分子机制尚不完全清楚。因此,我们专注于鉴定和表征调节各种原生动物寄生虫囊化相关基因表达的 Myb 蛋白。通过生物信息学分析,我们在 中鉴定出 48 个编码 MYB 结构域蛋白的基因。这些基因分为单重复 1R(20 个)、2R-MYB 蛋白(27 个)和一个 4R-MYB 蛋白。计算机分析表明这些蛋白具有多功能性,参与转录调控、染色质重塑、端粒维持和细胞凋亡。转录组数据分析揭示了 个基因的表达特征,表明在早期和晚期囊化-囊泡形成基因的调控中存在潜在的协调作用。此外,我们还鉴定出可能与生殖、减数细胞周期、泛素依赖性蛋白降解和内体运输相关的靶基因。总之,我们的研究结果表明 Myb 蛋白调节特定阶段的蛋白和广泛的细胞过程。这项研究为进一步探索囊化的分子机制提供了基础,并揭示了阿米巴病治疗干预的潜在靶点。

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本文引用的文献

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Encystation of in Axenic Culture.在无菌培养中包囊化。 (注:原文中“Encystation of in Axenic Culture.”表述似乎不完整,“of”后面缺少具体内容,这里是按照字面意思翻译的。)
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STREME: accurate and versatile sequence motif discovery.STREME:准确且通用的序列基序发现。
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Functional and evolutionary analysis of the Arabidopsis 4R-MYB protein SNAPc4 as part of the SNAP complex.拟南芥 4R-MYB 蛋白 SNAPc4 作为 SNAP 复合物一部分的功能和进化分析。
Plant Physiol. 2021 Apr 2;185(3):1002-1020. doi: 10.1093/plphys/kiaa067.
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The NAD Responsive Transcription Factor ERM-BP Functions Downstream of Cellular Aggregation and Is an Early Regulator of Development and Heat Shock Response in .NAD 反应性转录因子ERM-BP在细胞聚集下游发挥作用,是[具体物种名称未给出]发育和热休克反应的早期调节因子。
Front Cell Infect Microbiol. 2020 Jul 17;10:363. doi: 10.3389/fcimb.2020.00363. eCollection 2020.
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Phylogenomic Analysis of R2R3 MYB Transcription Factors in Sorghum and their Role in Conditioning Biofuel Syndrome.高粱中R2R3 MYB转录因子的系统基因组学分析及其在调节生物燃料综合征中的作用
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