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三种印度香料成分及其透明质酸共轭物在预防和治疗新冠后遗症方面的免疫调节和抗细胞因子治疗潜力:一种计算建模方法

Immunomodulatory and anticytokine therapeutic potential of three Indian spices constituents and its hyaluronic acid conjugates for prevention and post COVID-19 complications: a computational modeling approach.

作者信息

Baby P Nandu

机构信息

Department of Biochemistry, Amala Institute of Medical Sciences, Thrissur, Kerala, India.

Premier Healths, Edappal, Kerala, India.

出版信息

J Biomol Struct Dyn. 2024 Mar 6:1-21. doi: 10.1080/07391102.2024.2310202.

Abstract

Targeted drug delivery to SARS-CoV-2 host target proteins for preventing or blocking COVID-19 infection is making serious concern during COVID-19 pandemic and its consequent waves around the globe. People seek reliable, effective folkloric preventive medication for immediate and precautionary relief from COVID-19. These folkloric medicines were effective and saved many patients during the past COVID-19 pandemic. The current research study aims to deliver antiviral Indian spices phytocompounds and their hyaluronic acid conjugates to human host target proteins (ACE-2, TNF-α, IL-6, IL-1β, PAR-1) of SARS-CoV-2 to inhibit virus propagation and also to regulate early clinical complications of COVID-19. Targeted drug delivery of hyaluronic acid conjugated traditional natural bioactive agent produces more effective and fewer side effects in delivering novel drugs to human host proteins of COVID-19. molecular docking study of six phytocompounds from three Indian spices and standard drug atazanavir and its hyaluronic acid conjugates reveals that phytocompounds and its hyaluronic acid conjugates possess high affinity to binding pockets of SARS-CoV-2 human host targets with more binding affinity scores. Most notably HA cyclocurcumin exhibit a docking score -9.9 kcal/mol against ACE-2 (PDB ID 1R42) target protein similarly HA-Hydrazinocurcumin exhibit a docking score -9.8 kcal/mol against PAR-1 (PDB ID 3VW7). ADMET validation of phytocompounds and their hyaluronic acid conjugates reveals its best pharmacokinetic profile over standard antiviral drug especially HA cyclocurcumin conjugate possesses high HIA (86%) and good pharmacokinetic profiles. DFT analysis affirms the reason behind the higher binding affinity of hyaluronic acid conjugates of spices phytocompounds towards all screened target proteins especially HA-hydrazinocurcumin conjugate possess high softness (19.1570 eV) and low hardness (0.0522 eV) values. Finally, MD simulation of best-docked compounds against ACE-2 and PAR-1 target protein revealed that hyaluronic acid conjugates of Indian spices compounds exhibit stable RMSD values and more protein-ligand interactions during simulation than hyaluronic acid conjugates of drug atazanavir.Communicated by Ramaswamy H. Sarma.

摘要

在新冠疫情及其在全球引发的后续浪潮期间,将药物靶向递送至新冠病毒(SARS-CoV-2)的宿主靶蛋白以预防或阻断新冠病毒感染受到了广泛关注。人们寻求可靠、有效的民间预防药物,以便立即缓解新冠病毒感染并进行预防。在过去的新冠疫情中,这些民间药物发挥了作用,挽救了许多患者的生命。当前的研究旨在将印度香料植物化合物及其透明质酸共轭物递送至新冠病毒的人类宿主靶蛋白(血管紧张素转换酶2(ACE-2)、肿瘤坏死因子-α(TNF-α)、白细胞介素-6(IL-6)、白细胞介素-1β(IL-1β)、蛋白酶激活受体-1(PAR-1)),以抑制病毒传播,并调节新冠病毒感染的早期临床并发症。将透明质酸共轭的传统天然生物活性剂进行靶向药物递送,在将新型药物递送至新冠病毒的人类宿主蛋白时,能产生更有效且副作用更少的效果。对来自三种印度香料的六种植物化合物、标准药物阿扎那韦及其透明质酸共轭物进行的分子对接研究表明,植物化合物及其透明质酸共轭物对新冠病毒人类宿主靶标的结合口袋具有高亲和力,且结合亲和力得分更高。最值得注意的是,HA环姜黄素对ACE-2(PDB ID 1R42)靶蛋白的对接分数为-9.9 kcal/mol,同样,HA肼基姜黄素对PAR-1(PDB ID 3VW7)的对接分数为-9.8 kcal/mol。对植物化合物及其透明质酸共轭物进行的ADMET验证表明,其药代动力学特性优于标准抗病毒药物,尤其是HA环姜黄素共轭物具有较高的人体肠道吸收百分比(HIA,86%)和良好的药代动力学特性。密度泛函理论(DFT)分析证实了香料植物化合物的透明质酸共轭物对所有筛选出的靶蛋白具有更高结合亲和力的原因,特别是HA-肼基姜黄素共轭物具有高柔软度(19.1570 eV)和低硬度(0.0522 eV)值。最后,针对ACE-2和PAR-1靶蛋白对最佳对接化合物进行的分子动力学(MD)模拟表明,印度香料化合物的透明质酸共轭物在模拟过程中表现出稳定的均方根偏差(RMSD)值,且与阿扎那韦的透明质酸共轭物相比,具有更多的蛋白质-配体相互作用。由拉马斯瓦米·H·萨尔马传达。

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