Rahardhian Muhammad Ryan Radix, Sumiwi Sri Adi, Susilawati Yasmiwar, Muchtaridi Muchtaridi
Doctoral Program in Faculty of Pharmacy, Universitas Padjadjaran, Sumedang 45363, Indonesia.
Department of Biology Pharmacy, Sekolah Tinggi Ilmu Farmasi Yayasan Pharmasi Seamarang, Semarang 50192, Indonesia.
Int J Mol Sci. 2025 Mar 27;26(7):3068. doi: 10.3390/ijms26073068.
Sungkai leaves were selected due to their herbal medicine prevalence and documented biological activities. This study explores the immunomodulatory potential of kaempferol isolated from Sungkai ( Jack.) through a combination of in silico and in vitro methods. leaves were extracted with ethanol using maceration, followed by fractionation with n-hexane, ethyl acetate, and water using a separatory funnel. Among all the fractions, the ethyl acetate fraction demonstrated the strongest inhibitory effect on IL-6 (Interleukin 6) expression, leading to further separation for the enhanced analysis of its activity. The resulting sub-fractions were purified by vacuum liquid chromatography with n-hexane and ethyl acetate gradient. Sub-fraction E was isolated through preparative thin-layer chromatography to obtain a pure compound identified as kaempferol using UV, FTIR, MS, and NMR analyses. The isolated kaempferol was then evaluated by molecular docking and molecular dynamics simulations, employing MM-PBSA (Molecular Mechanics Poisson-Boltzmann Surface Area) for binding affinity calculations. Kaempferol showed a binding affinity (ΔG) of -5.98 kcal/mol, slightly stronger than TLA (tartaric acid) (-5.90 kcal/mol). Key interactions with amino acid residues, such as Gln175, Arg182, and Arg179, were observed. Additionally, molecular dynamics simulation demonstrated that kaempferol exhibited better stability than TLA between 15 ns and 100 ns. The MM-PBSA analysis showed that kaempferol has strong van der Waals (-17.02 kcal/mol) and electrostatic interactions (-293.16 kcal/mol), with binding free energy (-17.85 kcal/mol) significantly stronger than TLA (-1.00 kcal/mol). This stability, combined with its ability to reduce IL-6 expression in vitro, highlights kaempferol's immunomodulatory potential.
由于 Sungkai 叶具有草药应用普遍性和已记载的生物活性,因此被选用。本研究通过计算机模拟和体外实验相结合的方法,探索从 Sungkai(杰克)叶中分离出的山奈酚的免疫调节潜力。用乙醇浸渍法提取 Sungkai 叶,然后用分液漏斗依次用正己烷、乙酸乙酯和水进行分离。在所有馏分中,乙酸乙酯馏分对白细胞介素 -6(IL -6)表达的抑制作用最强,因此对其进行进一步分离以深入分析其活性。所得亚馏分通过正己烷和乙酸乙酯梯度的真空液相色谱法进行纯化。通过制备薄层色谱法分离出亚馏分 E,以获得使用紫外、傅里叶变换红外光谱、质谱和核磁共振分析鉴定为山奈酚的纯化合物。然后通过分子对接和分子动力学模拟对分离出的山奈酚进行评估,采用分子力学泊松 -玻尔兹曼表面积法(MM - PBSA)计算结合亲和力。山奈酚的结合亲和力(ΔG)为 -5.98 kcal/mol,略强于酒石酸(TLA)(-5.90 kcal/mol)。观察到与氨基酸残基如 Gln175、Arg182 和 Arg179 的关键相互作用。此外,分子动力学模拟表明,在 15 纳秒至 100 纳秒之间,山奈酚比 TLA 表现出更好的稳定性。MM - PBSA 分析表明,山奈酚具有很强的范德华相互作用(-17.02 kcal/mol)和静电相互作用(-293.16 kcal/mol),结合自由能(-17.85 kcal/mol)明显强于 TLA(-1.00 kcal/mol)。这种稳定性及其在体外降低 IL -6 表达的能力,突出了山奈酚的免疫调节潜力。