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从鞘氨醇单胞菌 DBS4 中鉴定两种新型水解酶,用于对映选择性降解手性除草剂精恶唑禾草灵。

Characterization of two novel hydrolases from Sphingopyxis sp. DBS4 for enantioselective degradation of chiral herbicide diclofop-methyl.

机构信息

Anhui Province Key Laboratory of Pollutant Sensitive Materials and Environmental Remediation, College of Life Sciences, Huaibei Normal University, 235000 Huaibei, China.

College of Chemistry and Materials Science, Huaibei Normal University, 235000 Huaibei, China.

出版信息

J Hazard Mater. 2024 May 5;469:133967. doi: 10.1016/j.jhazmat.2024.133967. Epub 2024 Mar 5.


DOI:10.1016/j.jhazmat.2024.133967
PMID:38457978
Abstract

Diclofop-methyl, an aryloxyphenoxypropionate (AOPP) herbicide, is a chiral compound with two enantiomers. Microbial detoxification and degradation of various enantiomers is garnering immense research attention. However, enantioselective catabolism of diclofop-methyl has been rarely explored, especially at the molecular level. This study cloned two novel hydrolase genes (dcmA and dcmH) in Sphingopyxis sp. DBS4, and characterized them for diclofop-methyl degradation. DcmA, a member of the amidase superfamily, exhibits 26.1-45.9% identity with functional amidases. Conversely, DcmH corresponded to the DUF3089 domain-containing protein family (a family with unknown function), sharing no significant similarity with other biochemically characterized proteins. DcmA exhibited a broad spectrum of substrates, with preferential hydrolyzation of (R)-(+)-diclofop-methyl, (R)-(+)-quizalofop-ethyl, and (R)-(+)-haloxyfop-methyl. DcmH also preferred (R)-(+)-quizalofop-ethyl and (R)-(+)-haloxyfop-methyl degradation while displaying no apparent enantioselective activity towards diclofop-methyl. Using site-directed mutagenesis and molecular docking, it was determined that Ser175 was the fundamental residue influencing DcmA's activity against the two enantiomers of diclofop-methyl. For the degradation of AOPP herbicides, DcmA is an enantioselective amidase that has never been reported in research. This study provided novel hydrolyzing enzyme resources for the remediation of diclofop-methyl in the environment and deepened the understanding of enantioselective degradation of chiral AOPP herbicides mediated by microbes.

摘要

精吡氟禾草灵,一种芳氧苯氧丙酸(AOPP)类除草剂,是一种具有两个对映异构体的手性化合物。微生物对各种对映异构体的解毒和降解正在引起广泛的研究关注。然而,精吡氟禾草灵的对映选择性代谢很少被探索,特别是在分子水平上。本研究在鞘氨醇单胞菌 DBS4 中克隆了两个新型水解酶基因(dcmA 和 dcmH),并对其进行了精吡氟禾草灵降解特性的研究。DcmA 属于酰胺酶超家族的一员,与功能酰胺酶的相似度为 26.1-45.9%。相反,DcmH 与 DUF3089 结构域蛋白家族(一个功能未知的家族)相对应,与其他具有生物化学特征的蛋白没有明显的相似性。DcmA 表现出广泛的底物谱,对(R)-(+)-精吡氟禾草灵、(R)-(+)-吡氟禾草灵和(R)-(+)-氟吡草腙的水解具有优先性。DcmH 也优先降解(R)-(+)-吡氟禾草灵和(R)-(+)-氟吡草腙,但对精吡氟禾草灵没有明显的对映选择性活性。通过定点突变和分子对接,确定 Ser175 是影响 DcmA 对精吡氟禾草灵两种对映体活性的基本残基。对于 AOPP 除草剂的降解,DcmA 是一种从未在研究中报道过的对映选择性酰胺酶。本研究为环境中精吡氟禾草灵的修复提供了新型的水解酶资源,并加深了对微生物介导的手性 AOPP 除草剂对映选择性降解的理解。

相似文献

[1]
Characterization of two novel hydrolases from Sphingopyxis sp. DBS4 for enantioselective degradation of chiral herbicide diclofop-methyl.

J Hazard Mater. 2024-5-5

[2]
Enantioselective degradation and ecotoxicity of the chiral herbicide diclofop in three freshwater alga cultures.

J Agric Food Chem. 2008-3-26

[3]
Enantioselective metabolism of the chiral herbicide diclofop-methyl and diclofop by HPLC in loach (Misgurnus anguillicaudatus) liver microsomes in vitro.

J Chromatogr B Analyt Technol Biomed Life Sci. 2014-10-15

[4]
Environmental behavior of the chiral aryloxyphenoxypropionate herbicide diclofop-methyl and diclofop: enantiomerization and enantioselective degradation in soil.

Environ Sci Technol. 2010-3-15

[5]
A novel esterase LanE from Edaphocola flava HME-24 and the enantioselective degradation mechanism of herbicide lactofen.

Ecotoxicol Environ Saf. 2020-8-23

[6]
Identification and characterization of a novel carboxylesterase (FpbH) that hydrolyzes aryloxyphenoxypropionate herbicides.

Biotechnol Lett. 2017-4

[7]
Estimating the potential toxicity of chiral diclofop-methyl: Mechanistic insight into the enantioselective behavior.

Toxicology. 2020-4-8

[8]
Enantioselective Catabolism of the Two Enantiomers of the Phenoxyalkanoic Acid Herbicide Dichlorprop by sp. DBS4.

J Agric Food Chem. 2020-7-1

[9]
Two dcm Gene Clusters Essential for the Degradation of Diclofop-methyl in a Microbial Consortium of Rhodococcus sp. JT-3 and Brevundimonas sp. JT-9.

J Agric Food Chem. 2018-11-6

[10]
Purification and properties of a novel quizalofop-p-ethyl-hydrolyzing esterase involved in quizalofop-p-ethyl degradation by Pseudomonas sp. J-2.

Microb Cell Fact. 2017-5-10

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